FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0333500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PDR-like ABC transporter (PDR4 ABC transporter).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0299) R2 : 0.263
β1 : 1.39 (0.11) R2dD : 0.271 R2D : 0.26
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0794 (0.0639) R2dN8 : 0.00333 R2N8 : -0.00749
σ : 0.562
deviance : 144.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.95 0.495 3.31 1.71 0.491 -0.462 1.89 -2.62 0.135 3.27 19.7 278 -- --
124.95 0.521 3.37 1.58 0.405 0.627 1.31 -- 0.0983 3.4 18 275 -- --
116.66 0.503 3.31 1.84 0.471 -0.259 -- -2.3 0.162 3.38 20.9 775 -- --
129.82 0.531 3.36 1.49 0.442 0.672 -- -- 0.104 3.01 17.8 309 -- --
126.64 0.524 3.3 2.11 -- -0.165 -- -2.57 0.231 -- 21.8 977 -- --
128.39 0.531 3.37 1.4 0.442 -- 1.17 -- 0.075 2.74 -- -- -- --
133.12 0.54 3.37 1.38 0.449 -- -- -- 0.0677 2.96 -- -- -- --
135.04 0.541 3.36 1.48 -- 0.398 -- -- 0.138 -- 28.3 171 -- --
179.84 0.625 3.41 -- 0.486 -0.932 -- -- -0.0949 3.24 14.63 1948 -- --
144.74 0.562 3.37 1.39 -- -- -- -- 0.0794 -- -- -- -- --
182.99 0.633 3.41 -- 0.477 -- -- -- -0.0854 2.98 -- -- -- --
168.05 0.604 3.45 -- -- -0.816 -- -- -0.2 -- 18.4 47520 -- --
196.04 0.654 3.41 -- -- -- -- -- -0.0754 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.19 temperature 20.0 270 > th dose independent rect. 17 16
9 110.59 temperature 20.0 270 > th dose independent rect. 15 20
10 110.61 temperature 20.0 270 < th dose independent rect. 18 15
12 110.67 temperature 20.0 270 < th dose independent sin 11 NA
20 110.77 temperature 20.0 270 > th dose independent rect. 14 23
37 111.01 temperature 20.0 270 > th dose independent sin 11 NA
45 111.14 temperature 20.0 270 < th dose independent rect. 10 22
68 111.36 temperature 20.0 270 < th dose independent rect. 18 21
99 111.55 wind 3.0 43200 < th dose independent rect. 11 2
112 111.63 temperature 20.0 270 > th dose independent rect. 24 23
124 111.77 temperature 20.0 270 < th dose independent rect. 3 23
125 111.78 temperature 20.0 270 < th dose independent no NA NA
128 111.82 temperature 20.0 270 > th dose independent rect. 3 23
144 111.96 temperature 20.0 270 > th dose independent no NA NA
149 112.03 wind 7.0 14400 > th dose dependent rect. 10 1
160 112.38 temperature 20.0 270 < th dose independent rect. 23 23
161 112.39 wind 3.0 43200 > th dose independent rect. 11 2
178 112.58 wind 7.0 14400 > th dose independent rect. 10 3
181 112.61 wind 7.0 14400 < th dose independent rect. 11 2
188 112.71 wind 5.0 43200 < th dose dependent rect. 11 2
191 112.79 atmosphere 1005.0 14400 < th dose independent rect. 16 1
199 112.88 wind 7.0 14400 > th dose independent rect. 12 1
205 112.96 atmosphere 1005.0 14400 > th dose independent rect. 16 1
207 112.99 atmosphere 1005.0 14400 < th dose independent rect. 13 1
209 113.03 atmosphere 1005.0 14400 < th dose independent rect. 12 6
212 113.06 atmosphere 1005.0 14400 < th dose independent rect. 13 4
219 113.10 temperature 20.0 270 > th dose independent rect. 7 23
222 113.11 wind 7.0 14400 > th dose dependent rect. 12 1
230 113.22 wind 7.0 14400 > th dose dependent rect. 10 3
246 113.39 temperature 20.0 720 < th dose independent rect. 19 4
253 113.42 wind 7.0 14400 > th dose dependent rect. 5 8
254 113.45 atmosphere 1005.0 14400 > th dose independent rect. 13 1
256 113.45 wind 3.0 43200 < th dose dependent rect. 21 15
261 113.49 wind 3.0 43200 < th dose dependent rect. 23 5
267 113.54 wind 3.0 43200 < th dose dependent rect. 21 8
268 113.56 atmosphere 1005.0 14400 > th dose independent rect. 12 6
283 113.64 wind 9.0 14400 < th dose independent rect. 6 5
287 113.65 wind 7.0 14400 > th dose dependent rect. 7 6
288 113.67 wind 9.0 14400 > th dose independent rect. 7 4
313 113.83 wind 3.0 43200 < th dose dependent rect. 23 14
330 113.93 wind 3.0 43200 < th dose dependent rect. 6 7
346 114.04 wind 3.0 43200 < th dose independent rect. 6 8
371 114.12 wind 9.0 14400 < th dose independent rect. 22 16
385 114.18 temperature 20.0 720 < th dose independent rect. 21 1
403 114.25 precipitation 0.1 14400 > th dose dependent rect. 17 1
424 114.33 radiation 1.0 14400 < th dose dependent rect. 19 10
449 114.40 wind 3.0 43200 < th dose dependent sin 8 NA
457 114.44 wind 7.0 14400 > th dose independent rect. 5 8
462 114.45 temperature 20.0 720 > th dose independent rect. 17 6
465 114.46 wind 1.0 43200 > th dose dependent rect. 12 1
495 114.53 temperature 20.0 720 > th dose dependent rect. 16 17
499 114.55 wind 3.0 43200 < th dose independent rect. 19 19
505 114.56 temperature 20.0 720 > th dose independent rect. 17 8
513 114.59 wind 7.0 14400 < th dose independent rect. 5 8
538 114.65 wind 3.0 43200 < th dose independent rect. 23 15
546 114.67 wind 7.0 14400 > th dose dependent rect. 24 14
575 114.76 wind 3.0 43200 > th dose independent rect. 6 8
580 114.79 atmosphere 1005.0 43200 < th dose independent rect. 22 1
600 114.85 wind 9.0 14400 < th dose independent rect. 2 12
606 114.87 wind 3.0 43200 < th dose independent rect. 6 1
640 114.97 temperature 20.0 4320 > th dose independent rect. 20 3
663 115.03 wind 3.0 43200 < th dose dependent rect. 6 1
671 115.04 wind 9.0 14400 > th dose independent rect. 22 16
682 115.07 atmosphere 995.0 14400 < th dose independent rect. 18 1
689 115.07 atmosphere 995.0 14400 < th dose dependent rect. 18 1
694 115.08 wind 3.0 43200 < th dose independent rect. 19 14
698 115.09 atmosphere 1005.0 14400 > th dose independent sin 19 NA
704 115.10 wind 3.0 43200 < th dose independent sin 4 NA
708 115.11 atmosphere 1005.0 14400 < th dose independent sin 18 NA
727 115.14 humidity 80.0 14400 > th dose independent rect. 4 1
733 115.15 wind 1.0 43200 > th dose dependent rect. 6 1
742 115.17 wind 3.0 43200 > th dose independent rect. 6 1
748 115.18 wind 3.0 43200 < th dose independent rect. 19 12
761 115.21 temperature 20.0 4320 > th dose independent rect. 21 1
772 115.23 wind 3.0 43200 > th dose independent rect. 19 19
786 115.27 temperature 20.0 4320 < th dose independent rect. 20 3
835 115.34 temperature 20.0 1440 > th dose dependent rect. 17 9
839 115.35 wind 3.0 43200 > th dose independent rect. 23 15
846 115.36 wind 3.0 14400 < th dose dependent rect. 3 1
848 115.37 humidity 80.0 14400 < th dose independent rect. 4 1
854 115.38 wind 3.0 43200 > th dose independent rect. 1 13
865 115.40 atmosphere 995.0 14400 > th dose independent rect. 17 4
870 115.40 wind 9.0 43200 < th dose dependent rect. 6 1
875 115.41 temperature 20.0 1440 > th dose dependent rect. 18 5
878 115.42 atmosphere 995.0 14400 > th dose independent rect. 18 1
891 115.44 wind 3.0 14400 < th dose independent rect. 3 1
898 115.44 temperature 20.0 720 > th dose dependent sin 12 NA
899 115.44 temperature 20.0 1440 > th dose dependent rect. 19 3
901 115.45 wind 3.0 43200 < th dose independent sin 9 NA
940 115.50 temperature 20.0 1440 > th dose dependent rect. 21 1
969 115.55 wind 3.0 43200 > th dose independent sin 4 NA