Os01g0609900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PDR-like ABC transporter (PDR4 ABC transporter).
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Os01g0609900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PDR-like ABC transporter (PDR4 ABC transporter).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 346.48 | 0.875 | 7.34 | 1.09 | 2.4 | 2.05 | -0.512 | 0.344 | 0.829 | 22.8 | 57.66 | 1371 | -- | -- |
| 346.38 | 0.867 | 7.34 | 1.15 | 2.41 | 2.06 | -0.498 | -- | 0.823 | 22.8 | 55.72 | 1369 | -- | -- |
| 347.29 | 0.868 | 7.34 | 1.13 | 2.44 | 2.06 | -- | 0.308 | 0.811 | 22.8 | 55.01 | 1348 | -- | -- |
| 347.45 | 0.868 | 7.34 | 1.16 | 2.42 | 2.08 | -- | -- | 0.815 | 22.8 | 55 | 1361 | -- | -- |
| 600.91 | 1.15 | 7.29 | 1.12 | -- | 1.78 | -- | -1.98 | 0.816 | -- | 63.21 | 1540 | -- | -- |
| 446.8 | 0.991 | 7.36 | 1.04 | 2.31 | -- | -0.697 | -- | 0.709 | 22.6 | -- | -- | -- | -- |
| 448.73 | 0.992 | 7.36 | 1.07 | 2.31 | -- | -- | -- | 0.712 | 22.5 | -- | -- | -- | -- |
| 613.84 | 1.16 | 7.28 | 1.05 | -- | 1.72 | -- | -- | 0.807 | -- | 63.62 | 1540 | -- | -- |
| 382.21 | 0.911 | 7.35 | -- | 2.4 | 2.16 | -- | -- | 0.751 | 22.8 | 61 | 1374 | -- | -- |
| 777.36 | 1.3 | 7.3 | 1.11 | -- | -- | -- | -- | 0.721 | -- | -- | -- | -- | -- |
| 479.07 | 1.02 | 7.39 | -- | 2.32 | -- | -- | -- | 0.592 | 22.5 | -- | -- | -- | -- |
| 643.05 | 1.18 | 7.31 | -- | -- | 1.74 | -- | -- | 0.691 | -- | 63.62 | 1540 | -- | -- |
| 810.07 | 1.33 | 7.33 | -- | -- | -- | -- | -- | 0.598 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 338.12 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 7 | 339.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 16 | 340.36 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 18 | 340.46 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 26 | 340.91 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 42 | 341.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 46 | 341.66 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 49 | 341.72 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 80 | 342.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 82 | 342.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 108 | 342.99 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 119 | 343.09 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 145 | 343.46 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 172 | 343.86 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 178 | 343.93 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 190 | 344.01 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 197 | 344.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 234 | 344.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 308 | 345.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 11 |
| 312 | 345.35 | humidity | 60 | 1440 | > th | dose dependent | sin | 21 | NA |
| 354 | 345.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 356 | 345.64 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 360 | 345.68 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 475 | 346.48 | humidity | 60 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 488 | 346.59 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 515 | 346.87 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 558 | 347.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 567 | 347.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 572 | 347.24 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 582 | 347.30 | humidity | 50 | 1440 | > th | dose dependent | rect. | 19 | 22 |
| 609 | 347.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 611 | 347.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 671 | 347.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 672 | 347.66 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 684 | 347.69 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 707 | 347.85 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 779 | 348.22 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 805 | 348.32 | humidity | 60 | 1440 | > th | dose dependent | no | NA | NA |
| 926 | 348.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 6 |