BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0511700 Os08g0511700|J075132M05
(140 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0511700 Leucine-rich repeat, typical subtype containin... 280 2e-76
AK065422 266 4e-72
Os10g0572300 Leucine-rich repeat, typical subtype containin... 190 3e-49
Os04g0476700 Leucine-rich repeat, typical subtype containin... 102 7e-23
Os02g0593600 Leucine-rich repeat, typical subtype containin... 100 3e-22
Os04g0605300 Leucine-rich repeat, typical subtype containin... 86 1e-17
Os02g0826600 Leucine-rich repeat, typical subtype containin... 77 5e-15
Os10g0456200 Ubiquitin domain containing protein 75 1e-14
>Os08g0511700 Leucine-rich repeat, typical subtype containing protein
Length = 140
Score = 280 bits (717), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT
Sbjct: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
Query: 61 SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 120
SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL
Sbjct: 61 SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 120
Query: 121 QVPPRDIALKGAQVFLTNFP 140
QVPPRDIALKGAQVFLTNFP
Sbjct: 121 QVPPRDIALKGAQVFLTNFP 140
>AK065422
Length = 470
Score = 266 bits (680), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/136 (97%), Positives = 133/136 (97%)
Query: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT
Sbjct: 292 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 351
Query: 61 SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 120
SLIKLNVGNNFADLQYLPRSIGNLEML ELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL
Sbjct: 352 SLIKLNVGNNFADLQYLPRSIGNLEMLGELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 411
Query: 121 QVPPRDIALKGAQVFL 136
QVPPRDIALKGAQ +
Sbjct: 412 QVPPRDIALKGAQAVV 427
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
N L +LP ++G+L LE L V N L SLP ++ SLT+LK++ V N+L+ +P
Sbjct: 223 NQLSSLPSSIGRLLNLEELDVGSNGLSSLPDSIGSLTRLKKLIVETNDLDELPYTIGHCV 282
Query: 61 SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 120
SL++L G N L+ LP ++G LE LE L + N +R LP + +L L+ + N L
Sbjct: 283 SLVELQAGYNH--LKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNEL 340
Query: 121 QVPPRDIALKGAQVFL 136
+ P + + + L
Sbjct: 341 ESIPENFCFATSLIKL 356
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
N + LPE++G L L L++R N L SLP+++ L L+E+DV N L S+P++ T
Sbjct: 200 NRISQLPESIGDLRSLIYLNMRGNQLSSLPSSIGRLLNLEELDVGSNGLSSLPDSIGSLT 259
Query: 61 SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 120
L KL V N DL LP +IG+ L EL N ++ LP++ G L+ L +L N L
Sbjct: 260 RLKKLIVETN--DLDELPYTIGHCVSLVELQAGYNHLKALPEAVGKLEPLEILSVRYNNL 317
Query: 121 QVPPRDIA 128
+ P +A
Sbjct: 318 RSLPTTMA 325
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Query: 2 HLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFATS 61
++ LP+++GKL L L + N L +LP + L L ++D+ N + +PE+ S
Sbjct: 155 QIEWLPDSIGKLTGLVTLDISENRLLALPDAIGKLFSLAKLDIHANRISQLPESIGDLRS 214
Query: 62 LIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPLQ 121
LI LN+ N L LP SIG L LEELD+ +N + LPDS G+L L+ L E N L
Sbjct: 215 LIYLNMRGN--QLSSLPSSIGRLLNLEELDVGSNGLSSLPDSIGSLTRLKKLIVETNDLD 272
Query: 122 VPPRDIA 128
P I
Sbjct: 273 ELPYTIG 279
>Os10g0572300 Leucine-rich repeat, typical subtype containing protein
Length = 396
Score = 190 bits (482), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 90/136 (66%), Positives = 112/136 (82%)
Query: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
N LKALPEA+GKLE LEIL++ YN ++ LPTT+ SL++L+E+DVSFNE+E IPEN CFAT
Sbjct: 218 NQLKALPEAIGKLEKLEILTLHYNRIKGLPTTVGSLSRLRELDVSFNEVEVIPENICFAT 277
Query: 61 SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 120
SL+KLN+ NFADL+ LP+SIGNLEMLEELD+S+NQIRVLPDSF L LRV A+E PL
Sbjct: 278 SLVKLNLSRNFADLRALPKSIGNLEMLEELDISSNQIRVLPDSFRCLSRLRVFHADETPL 337
Query: 121 QVPPRDIALKGAQVFL 136
+ PPR++ GAQ +
Sbjct: 338 EFPPREVVKLGAQAVV 353
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
N LK+LP + G L L L + N L++LP + L L+ + V NELE +P T
Sbjct: 149 NQLKSLPSSFGNLTSLANLDLSSNMLKALPDCLGKLANLRRLIVETNELEELPYTIGSCT 208
Query: 61 SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 120
SL++L + +F L+ LP +IG LE LE L + N+I+ LP + G+L LR L N +
Sbjct: 209 SLVELRL--DFNQLKALPEAIGKLEKLEILTLHYNRIKGLPTTVGSLSRLRELDVSFNEV 266
Query: 121 QVPPRDIALKGAQVFL 136
+V P +I + V L
Sbjct: 267 EVIPENICFATSLVKL 282
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
+ ++ LP ++GKL+ + L + N + +LP+T+ SL L ++D+ N+L ++P+ F +
Sbjct: 80 DQIEWLPVSLGKLQDVTELDLSENRIMALPSTIGSLRYLTKLDLHSNQLINLPDAFGELS 139
Query: 61 SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 120
+LI L++ N L+ LP S GNL L LD+S+N ++ LPD G L +LR L E N L
Sbjct: 140 NLIDLDLHAN--QLKSLPSSFGNLTSLANLDLSSNMLKALPDCLGKLANLRRLIVETNEL 197
Query: 121 QVPPRDIA 128
+ P I
Sbjct: 198 EELPYTIG 205
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 2/128 (1%)
Query: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
N + ALP +G L L L + N L +LP L+ L ++D+ N+L+S+P +F T
Sbjct: 103 NRIMALPSTIGSLRYLTKLDLHSNQLINLPDAFGELSNLIDLDLHANQLKSLPSSFGNLT 162
Query: 61 SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 120
SL L++ +N L+ LP +G L L L + N++ LP + G+ L LR + N L
Sbjct: 163 SLANLDLSSNM--LKALPDCLGKLANLRRLIVETNELEELPYTIGSCTSLVELRLDFNQL 220
Query: 121 QVPPRDIA 128
+ P I
Sbjct: 221 KALPEAIG 228
>Os04g0476700 Leucine-rich repeat, typical subtype containing protein
Length = 271
Score = 102 bits (255), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 1 NHLKALPEAVG-KLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFA 59
N L LP +G +L L L V N LRSLP+++ + L +D FNEL +P
Sbjct: 66 NGLAYLPTNIGYELVNLRKLWVHMNKLRSLPSSICEMRSLYLLDAHFNELCGLPSAIGKL 125
Query: 60 TSLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENP 119
+SL LN+ +NF+DL+ LP S G+L L ELD+SNNQI LPD+FG L L L E+NP
Sbjct: 126 SSLEILNLSSNFSDLKDLPASFGDLLNLRELDLSNNQIHALPDNFGRLDKLEKLNLEQNP 185
Query: 120 LQVPPRDIALKGAQV 134
L +PP +I KG
Sbjct: 186 LSMPPMEIVNKGVDA 200
>Os02g0593600 Leucine-rich repeat, typical subtype containing protein
Length = 501
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 82/132 (62%), Gaps = 1/132 (0%)
Query: 1 NHLKALPEAVGK-LEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFA 59
N L LP +G+ + LE L V N LRSLP+++ + L+ +D FN+L +P
Sbjct: 293 NVLSYLPTGIGQEMARLEKLWVHLNKLRSLPSSVCEMRSLRLLDAHFNQLRGLPAGIGRL 352
Query: 60 TSLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENP 119
+L LN+ +NF+D++ LP S G+L L ELD+SNNQI LPD FG L+ L LR ++NP
Sbjct: 353 AALESLNLSSNFSDMRDLPASFGDLLGLRELDLSNNQIHALPDCFGRLQRLERLRLDQNP 412
Query: 120 LQVPPRDIALKG 131
L VPP+++ G
Sbjct: 413 LAVPPKEVVAGG 424
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
N LK +P+A+G LE LE L + N L SLP ++ LT LK +DVS N+L S+P++
Sbjct: 224 NQLKNVPDAIGGLEHLEELRLASNALVSLPDSIGLLTSLKILDVSGNKLRSLPDSISKCR 283
Query: 61 SLIKLNVGNNFADLQYLPRSIGN-LEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENP 119
SL++L+V N L YLP IG + LE+L + N++R LP S ++ LR+L A N
Sbjct: 284 SLVELDVSYNV--LSYLPTGIGQEMARLEKLWVHLNKLRSLPSSVCEMRSLRLLDAHFNQ 341
Query: 120 LQVPPRDIA 128
L+ P I
Sbjct: 342 LRGLPAGIG 350
>Os04g0605300 Leucine-rich repeat, typical subtype containing protein
Length = 352
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 1 NHLKALPEAVG-KLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFA 59
N L LP+ +G +L L LSV N L LP++ + +T L+ +D N L ++P+
Sbjct: 133 NELTKLPDTLGFELHSLRKLSVNSNKLAQLPSSTSHMTALRALDARLNCLRALPDGLENL 192
Query: 60 TSLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENP 119
+L LNV NF L+ LP ++G L L ELD+S N I LPDS G L L A NP
Sbjct: 193 ANLEALNVSQNFQFLRELPYAVGLLASLRELDVSYNSIAALPDSMGCLTKLARFSAVGNP 252
Query: 120 LQVPPRDIALKG 131
L PP D+ +G
Sbjct: 253 LVSPPMDVVEQG 264
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 77/126 (61%), Gaps = 4/126 (3%)
Query: 1 NHLKALPEAV-GKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFA 59
N+L+++PE++ +L + +L VR N L+SLP ++ L+KLK ++VS N LES+P
Sbjct: 63 NNLESIPESIIARLLNVVVLDVRSNQLKSLPNSIGCLSKLKVLNVSGNLLESLPNTIEEC 122
Query: 60 TSLIKLNVGNNFADLQYLPRSIG-NLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEEN 118
+L +L+ NF +L LP ++G L L +L +++N++ LP S ++ LR L A N
Sbjct: 123 RALEELHA--NFNELTKLPDTLGFELHSLRKLSVNSNKLAQLPSSTSHMTALRALDARLN 180
Query: 119 PLQVPP 124
L+ P
Sbjct: 181 CLRALP 186
>Os02g0826600 Leucine-rich repeat, typical subtype containing protein
Length = 586
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 1 NHLKALPEAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFAT 60
N+L+ L E + L L +L++ +NN+ SLP + L LK +DVS N++ + PE FAT
Sbjct: 55 NNLEVLREDLRNLSSLVVLNISHNNISSLPAAIGDLPLLKSLDVSSNQINAFPEEIGFAT 114
Query: 61 SLIKLNVGNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPL 120
+L+K++ NN L LP S+ L EL+ SNN I VLPD L L E N L
Sbjct: 115 ALVKVDCSNNC--LTDLPVSLARCLELSELNASNNTISVLPDELAGCSKLFRLNLEGNKL 172
>Os10g0456200 Ubiquitin domain containing protein
Length = 378
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 8 EAVGKLEPLEILSVRYNNLRSLPTTMASLTKLKEVDVSFNELESIPENFCFATSLIKLNV 67
E + ++ L +LS+ N L +LP+++ S+T L+E+ ++ N LE++P L L
Sbjct: 197 EGLTCVQTLTVLSLSQNRLVTLPSSLGSITHLRELRIANNRLENLPVEIGLLKHLEILIA 256
Query: 68 GNNFADLQYLPRSIGNLEMLEELDMSNNQIRVLPDSFGNLKHLRVLRAEENPLQVPPRDI 127
NN + LP SIG E L E+D+S+N + LP++FGNL+HL+ L N L P
Sbjct: 257 NNN--RITSLPSSIGGCESLNEVDLSSNLLAELPEAFGNLQHLKALSVRNNGLTSLPSAF 314
Query: 128 ALKGAQVF 135
+K +Q+
Sbjct: 315 FIKCSQLI 322
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,352,370
Number of extensions: 159261
Number of successful extensions: 4297
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 4433
Number of HSP's successfully gapped: 21
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)