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Os10g0572300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, typical subtype containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.84 (0.0244) R2 : 0.728
β1 : 1.52 (0.0902) R2dD : 0.18 R2D : 0.0886
β2 : 1.77 (0.0595) R2dC : 0.558 R2C : 0.441
β3 : 0.902 (0.0782) R2dE : 0.0886 R2E : -0.103
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.674 (0.053) R2dN8 : 0.135 R2N8 : 0.0264
σ : 0.455
deviance : 95.28
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C
peak time of C : 0.747
E
wheather : humidity
threshold : 73.88
memory length : 1278
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.98 0.458 9.83 1.62 1.67 0.893 0.0284 -0.632 0.698 0.758 72.09 1355 -- --
95.27 0.455 9.84 1.52 1.76 0.897 0.0426 -- 0.674 0.748 73.94 1278 -- --
94.88 0.454 9.83 1.62 1.71 0.906 -- -0.633 0.698 0.763 72.21 1321 -- --
95.28 0.455 9.84 1.52 1.77 0.902 -- -- 0.674 0.747 73.88 1278 -- --
168.85 0.605 9.83 1.52 -- 1.03 -- -0.187 0.602 -- 79 14 -- --
122.88 0.52 9.87 1.35 1.6 -- -0.101 -- 0.553 0.673 -- -- -- --
122.93 0.519 9.87 1.35 1.6 -- -- -- 0.554 0.67 -- -- -- --
168.8 0.605 9.84 1.49 -- 1.03 -- -- 0.565 -- 79 14 -- --
148.4 0.567 9.91 -- 1.87 0.916 -- -- 0.473 0.468 84 1013 -- --
283.49 0.787 9.84 1.41 -- -- -- -- 0.582 -- -- -- -- --
171.3 0.612 9.9 -- 1.62 -- -- -- 0.403 0.71 -- -- -- --
226.88 0.702 9.88 -- -- 1 -- -- 0.402 -- 78.79 20 -- --
336.07 0.856 9.87 -- -- -- -- -- 0.425 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.77 humidity 70 1440 > th dose independent rect. 17 21
6 94.94 humidity 80 1440 < th dose dependent rect. 19 19
12 95.21 humidity 70 1440 < th dose independent rect. 17 21
19 95.50 humidity 80 1440 < th dose dependent rect. 23 15
28 95.74 humidity 80 1440 < th dose dependent sin 6 NA
49 96.06 humidity 90 720 < th dose dependent rect. 18 6
62 96.27 humidity 70 1440 > th dose independent rect. 9 23
77 96.44 humidity 70 1440 > th dose independent rect. 9 12
82 96.46 humidity 70 1440 > th dose independent rect. 9 20
86 96.47 humidity 70 1440 > th dose independent rect. 9 18
99 96.67 humidity 70 1440 > th dose independent rect. 4 17
100 96.67 humidity 70 1440 > th dose independent rect. 2 19
139 96.71 humidity 70 1440 > th dose independent no NA NA
147 96.71 humidity 70 1440 > th dose independent rect. 6 23
159 96.73 humidity 70 1440 > th dose independent rect. 9 5
173 96.80 humidity 70 720 > th dose independent sin 13 NA
174 96.80 humidity 80 1440 < th dose dependent rect. 11 2
195 96.90 humidity 70 1440 > th dose independent sin 9 NA
235 97.17 humidity 70 720 < th dose independent sin 12 NA
246 97.25 humidity 70 720 > th dose independent rect. 15 13
256 97.29 humidity 80 720 < th dose dependent rect. 18 14
263 97.36 humidity 70 1440 > th dose independent sin 0 NA
275 97.41 humidity 80 1440 < th dose dependent rect. 23 23
277 97.42 humidity 80 1440 < th dose dependent no NA NA
280 97.43 humidity 80 1440 < th dose dependent rect. 5 23
284 97.44 humidity 80 1440 < th dose dependent rect. 3 23
321 97.53 humidity 70 1440 < th dose independent rect. 9 23
322 97.53 humidity 60 720 > th dose dependent rect. 17 4
328 97.54 humidity 90 720 < th dose dependent rect. 19 2
343 97.57 humidity 80 1440 < th dose dependent rect. 9 23
344 97.58 humidity 70 1440 > th dose independent rect. 4 10
345 97.58 humidity 70 1440 > th dose independent rect. 2 12
355 97.60 humidity 70 1440 > th dose independent rect. 7 7
401 97.69 humidity 70 1440 < th dose independent rect. 9 11
437 97.79 humidity 70 720 > th dose independent rect. 15 5
449 97.83 humidity 70 720 > th dose independent rect. 15 18
456 97.86 humidity 50 720 > th dose dependent rect. 17 8
468 97.92 humidity 70 1440 < th dose independent rect. 13 23
473 97.95 humidity 70 1440 < th dose independent no NA NA
474 97.95 humidity 70 1440 < th dose independent rect. 6 14
545 98.00 humidity 70 1440 < th dose independent rect. 9 5
548 98.00 humidity 60 720 > th dose dependent rect. 16 6
560 98.03 humidity 80 1440 < th dose independent rect. 5 11
575 98.06 humidity 80 720 > th dose independent rect. 14 8
632 98.20 humidity 50 1440 > th dose dependent rect. 11 3
686 98.37 humidity 70 720 > th dose dependent sin 18 NA
700 98.43 humidity 60 720 > th dose dependent sin 16 NA
705 98.45 humidity 70 1440 < th dose independent sin 9 NA
717 98.47 humidity 70 720 > th dose dependent rect. 9 16
756 98.55 humidity 70 720 > th dose dependent rect. 10 13
767 98.60 humidity 70 1440 < th dose independent sin 23 NA
804 98.66 radiation 10 1440 > th dose independent rect. 15 23
868 98.79 radiation 10 1440 > th dose independent rect. 15 21
927 98.93 humidity 90 720 < th dose dependent sin 14 NA