Os10g0456200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin domain containing protein.
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Os10g0456200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.18 | 0.157 | 10.8 | -0.252 | 0.325 | 0.177 | 0.0638 | -0.654 | -0.0541 | 3.5 | 19.63 | 2053 | -- | -- |
| 11.78 | 0.16 | 10.8 | -0.138 | 0.32 | 0.276 | 0.101 | -- | -0.0211 | 3.42 | 19.2 | 2090 | -- | -- |
| 11.19 | 0.156 | 10.8 | -0.251 | 0.325 | 0.178 | -- | -0.648 | -0.0542 | 3.5 | 19.61 | 2040 | -- | -- |
| 11.61 | 0.159 | 10.8 | -0.142 | 0.333 | 0.384 | -- | -- | -0.0221 | 3.57 | 18.4 | 2015 | -- | -- |
| 16.77 | 0.191 | 10.8 | -0.269 | -- | 0.201 | -- | -0.615 | -0.0503 | -- | 20 | 2501 | -- | -- |
| 13.57 | 0.173 | 10.8 | -0.0186 | 0.329 | -- | 0.0314 | -- | 0.0288 | 3.42 | -- | -- | -- | -- |
| 13.57 | 0.173 | 10.8 | -0.0192 | 0.329 | -- | -- | -- | 0.0286 | 3.42 | -- | -- | -- | -- |
| 16.97 | 0.192 | 10.8 | -0.201 | -- | 0.416 | -- | -- | -0.0396 | -- | 18.59 | 2408 | -- | -- |
| 12.17 | 0.162 | 10.8 | -- | 0.322 | 0.315 | -- | -- | -0.00225 | 3.52 | 18.3 | 1990 | -- | -- |
| 19.65 | 0.207 | 10.8 | -0.0053 | -- | -- | -- | -- | 0.0373 | -- | -- | -- | -- | -- |
| 13.58 | 0.172 | 10.8 | -- | 0.329 | -- | -- | -- | 0.0308 | 3.42 | -- | -- | -- | -- |
| 17.73 | 0.196 | 10.8 | -- | -- | 0.318 | -- | -- | 0.00157 | -- | 18.3 | 2395 | -- | -- |
| 19.65 | 0.207 | 10.8 | -- | -- | -- | -- | -- | 0.0379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.68 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 2 | 10.73 | radiation | 10 | 30 | < th | dose independent | rect. | 5 | 18 |
| 3 | 10.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 6 | 10.81 | radiation | 30 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 8 | 10.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 10 | 10.91 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 14 | 10.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 16 | 10.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 17 | 10.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 28 | 10.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 2 |
| 29 | 10.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 31 | 10.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 41 | 10.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 66 | 10.99 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 68 | 11.00 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 92 | 11.01 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 94 | 11.01 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 97 | 11.02 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 127 | 11.03 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 156 | 11.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 169 | 11.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 181 | 11.07 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 183 | 11.07 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 202 | 11.08 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 207 | 11.08 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 223 | 11.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 262 | 11.11 | humidity | 50 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 270 | 11.12 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 297 | 11.14 | atmosphere | 995 | 43200 | > th | dose independent | sin | 5 | NA |
| 298 | 11.14 | atmosphere | 995 | 43200 | < th | dose independent | sin | 5 | NA |
| 301 | 11.14 | radiation | 10 | 4320 | < th | dose independent | rect. | 24 | 5 |
| 317 | 11.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 328 | 11.15 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 9 |
| 331 | 11.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 350 | 11.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 371 | 11.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 382 | 11.18 | radiation | 10 | 90 | < th | dose independent | rect. | 5 | 13 |
| 431 | 11.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 441 | 11.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 474 | 11.23 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 16 |
| 483 | 11.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 495 | 11.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 506 | 11.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 509 | 11.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 531 | 11.25 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 537 | 11.25 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 6 | 19 |
| 582 | 11.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 587 | 11.27 | atmosphere | 995 | 43200 | < th | dose independent | sin | 19 | NA |
| 588 | 11.27 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 1 |
| 595 | 11.27 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 622 | 11.27 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 671 | 11.29 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 745 | 11.30 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 752 | 11.31 | atmosphere | 995 | 43200 | > th | dose independent | sin | 19 | NA |
| 764 | 11.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 17 |
| 802 | 11.32 | atmosphere | 995 | 30 | > th | dose independent | rect. | 5 | 18 |
| 817 | 11.32 | radiation | 30 | 30 | < th | dose dependent | rect. | 5 | 5 |
| 823 | 11.33 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 824 | 11.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 829 | 11.33 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 12 |
| 833 | 11.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 14 |
| 851 | 11.33 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 8 | NA |
| 854 | 11.33 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 912 | 11.35 | wind | 1 | 30 | > th | dose independent | rect. | 23 | 6 |
| 914 | 11.35 | radiation | 10 | 30 | < th | dose independent | rect. | 5 | 9 |
| 945 | 11.35 | humidity | 60 | 30 | > th | dose dependent | rect. | 5 | 5 |
| 948 | 11.35 | humidity | 60 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 959 | 11.36 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 968 | 11.36 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 18 |