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Os02g0826600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, typical subtype containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.5 (0.0175) R2 : 0.675
β1 : 1.16 (0.0641) R2dD : 0.243 R2D : 0.177
β2 : 1.03 (0.0444) R2dC : 0.384 R2C : 0.384
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.383 (0.0374) R2dN8 : 0.1 R2N8 : 0.0343
σ : 0.329
deviance : 49.35
__
_____
C
peak time of C : 3.85
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.1 0.305 8.51 1.08 0.993 -0.764 -0.468 0.941 0.342 4.15 50.28 8 -- --
42.52 0.304 8.5 1.05 0.988 -0.859 -0.489 -- 0.341 4.22 53.27 50 -- --
42.61 0.304 8.51 1.09 0.989 -0.743 -- 1.23 0.342 4.12 50.41 8 -- --
43.17 0.306 8.5 1.07 0.983 -0.893 -- -- 0.338 4.16 54.4 51 -- --
85.45 0.431 8.49 1.12 -- -0.963 -- 1.22 0.453 -- 45.05 390 -- --
48.25 0.326 8.5 1.15 1.03 -- -0.616 -- 0.379 3.88 -- -- -- --
49.35 0.329 8.5 1.16 1.03 -- -- -- 0.383 3.85 -- -- -- --
86.56 0.433 8.5 1.07 -- -1.12 -- -- 0.412 -- 53.55 417 -- --
73.38 0.399 8.54 -- 1.01 -1.01 -- -- 0.234 4 54.09 49 -- --
107.57 0.485 8.5 1.2 -- -- -- -- 0.41 -- -- -- -- --
84.93 0.431 8.52 -- 1.05 -- -- -- 0.253 3.84 -- -- -- --
115.42 0.5 8.54 -- -- -1.69 -- -- 0.238 -- 55.09 414 -- --
145.83 0.564 8.53 -- -- -- -- -- 0.276 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.75 radiation 1.0 10 > th dose dependent rect. 8 4
3 39.83 temperature 15.0 270 > th dose independent rect. 12 18
4 39.95 radiation 40.0 10 < th dose independent rect. 3 14
8 40.04 temperature 15.0 10 > th dose independent rect. 14 18
9 40.17 radiation 1.0 30 > th dose dependent rect. 6 6
65 40.54 temperature 15.0 270 > th dose independent rect. 6 6
87 40.79 radiation 40.0 10 < th dose independent rect. 3 17
101 40.83 wind 7.0 10 < th dose independent rect. 14 18
123 40.93 atmosphere 1010.0 30 < th dose independent rect. 14 18
146 41.00 radiation 40.0 270 < th dose dependent rect. 15 11
148 41.01 atmosphere 1015.0 270 < th dose dependent rect. 1 5
152 41.05 humidity 90.0 10 < th dose independent rect. 8 6
168 41.07 temperature 25.0 270 < th dose independent rect. 1 5
170 41.10 radiation 1.0 270 > th dose independent rect. 6 6
180 41.14 precipitation 0.1 10 < th dose independent rect. 14 18
181 41.14 atmosphere 1010.0 270 < th dose independent rect. 11 19
182 41.14 precipitation 0.1 10 < th dose dependent rect. 14 18
189 41.17 temperature 30.0 90 < th dose dependent rect. 3 5
191 41.18 temperature 20.0 10 > th dose independent rect. 8 6
202 41.23 precipitation 0.1 270 < th dose independent rect. 12 18
204 41.23 precipitation 0.1 270 < th dose dependent rect. 12 18
215 41.27 atmosphere 1015.0 270 < th dose dependent rect. 3 2
216 41.28 wind 9.0 10 < th dose independent rect. 8 6
252 41.32 radiation 40.0 10 > th dose independent rect. 14 22
257 41.34 precipitation 0.1 10 < th dose independent rect. 3 5
262 41.34 precipitation 0.1 10 < th dose dependent rect. 3 5
264 41.35 atmosphere 1010.0 90 < th dose independent rect. 3 5
267 41.36 atmosphere 1015.0 90 < th dose dependent rect. 3 5
269 41.37 wind 1.0 30 > th dose independent rect. 8 6
272 41.38 atmosphere 1010.0 270 < th dose independent rect. 11 10
274 41.39 radiation 40.0 10 > th dose independent rect. 9 3
298 41.40 wind 9.0 270 < th dose independent rect. 6 6
299 41.40 temperature 30.0 270 < th dose dependent rect. 1 5
302 41.41 radiation 20.0 270 < th dose independent rect. 15 10
324 41.42 wind 9.0 270 < th dose independent rect. 12 18
332 41.44 temperature 20.0 270 > th dose independent rect. 8 2
342 41.47 precipitation 0.1 270 < th dose independent rect. 6 6
343 41.47 temperature 30.0 270 < th dose dependent rect. 3 2
345 41.47 precipitation 0.1 270 < th dose dependent rect. 6 6
346 41.48 atmosphere 995.0 10 > th dose independent rect. 14 18
349 41.49 temperature 10.0 10 > th dose independent rect. 8 6
351 41.49 atmosphere 995.0 10 > th dose independent rect. 8 6
352 41.49 atmosphere 1015.0 10 < th dose independent rect. 8 6
353 41.49 radiation 1.0 10 > th dose independent rect. 8 6
354 41.49 precipitation 0.1 10 < th dose independent rect. 8 6
356 41.49 precipitation 0.1 10 < th dose dependent rect. 8 6
363 41.52 atmosphere 995.0 270 > th dose independent rect. 6 6
364 41.52 atmosphere 1015.0 270 < th dose independent rect. 6 6
370 41.53 temperature 15.0 270 > th dose independent rect. 11 10
373 41.53 radiation 40.0 90 < th dose dependent rect. 3 5
378 41.54 atmosphere 995.0 90 > th dose dependent rect. 19 8
379 41.55 radiation 1.0 270 > th dose independent rect. 8 2
387 41.57 humidity 90.0 270 < th dose independent rect. 8 2
409 41.58 wind 9.0 30 < th dose independent rect. 8 19
414 41.59 wind 7.0 30 < th dose independent rect. 3 5
427 41.61 radiation 40.0 10 < th dose independent rect. 14 18
438 41.63 temperature 10.0 90 > th dose independent rect. 3 5
440 41.63 temperature 30.0 90 < th dose independent rect. 3 5
441 41.63 humidity 50.0 90 > th dose independent rect. 3 5
443 41.63 atmosphere 995.0 90 > th dose independent rect. 3 5
445 41.63 precipitation 0.1 270 < th dose independent rect. 1 5
447 41.63 temperature 10.0 90 > th dose independent rect. 8 19
448 41.63 precipitation 0.1 270 < th dose dependent rect. 1 5
465 41.65 radiation 40.0 90 < th dose independent rect. 3 5
507 41.69 wind 9.0 30 < th dose dependent rect. 3 5
509 41.70 temperature 10.0 1440 > th dose independent rect. 9 6
513 41.70 temperature 10.0 1440 > th dose independent rect. 15 18
517 41.71 precipitation 0.1 270 < th dose independent rect. 3 2
518 41.71 radiation 20.0 90 < th dose independent rect. 3 5
521 41.71 precipitation 0.1 270 < th dose dependent rect. 3 2
538 41.73 atmosphere 1010.0 270 < th dose independent rect. 1 5
541 41.73 humidity 50.0 270 > th dose independent rect. 6 6
545 41.73 atmosphere 1015.0 10 < th dose dependent rect. 14 18
546 41.74 atmosphere 1000.0 90 > th dose independent rect. 19 8
549 41.74 precipitation 0.1 270 < th dose independent rect. 10 22
550 41.74 precipitation 0.1 270 < th dose dependent rect. 10 22
551 41.74 radiation 40.0 10 > th dose dependent rect. 13 23
553 41.75 wind 7.0 270 < th dose independent rect. 1 5
556 41.75 radiation 1.0 270 < th dose dependent rect. 2 11
564 41.77 temperature 10.0 270 > th dose independent rect. 1 5
567 41.77 humidity 50.0 270 > th dose independent rect. 1 5
570 41.77 atmosphere 995.0 270 > th dose independent rect. 1 5
572 41.77 radiation 20.0 270 < th dose independent rect. 1 5
578 41.77 temperature 10.0 270 > th dose independent rect. 6 19
581 41.77 radiation 1.0 270 < th dose dependent rect. 2 9
586 41.78 atmosphere 1000.0 270 > th dose independent rect. 17 8
632 41.81 precipitation 0.1 10 < th dose independent rect. 8 19
635 41.81 humidity 50.0 90 > th dose dependent rect. 17 10
636 41.81 precipitation 0.1 10 < th dose dependent rect. 8 19
649 41.83 atmosphere 995.0 270 > th dose independent rect. 12 18
654 41.84 temperature 25.0 90 > th dose independent rect. 12 8
658 41.84 humidity 60.0 90 > th dose dependent rect. 19 8
677 41.85 radiation 40.0 270 < th dose dependent rect. 1 5
708 41.87 radiation 1.0 270 < th dose independent rect. 1 12
725 41.88 radiation 1.0 270 < th dose independent rect. 1 10
729 41.88 wind 9.0 270 < th dose dependent rect. 3 2
731 41.89 wind 9.0 270 < th dose independent rect. 6 19
740 41.90 temperature 10.0 270 > th dose dependent rect. 11 10
777 41.92 precipitation 0.1 270 < th dose independent rect. 11 10
781 41.92 precipitation 0.1 270 < th dose dependent rect. 11 10
803 41.94 wind 7.0 270 < th dose independent rect. 3 2
807 41.94 radiation 40.0 10 < th dose independent rect. 12 20
812 41.94 atmosphere 995.0 270 > th dose dependent rect. 17 9
816 41.95 temperature 10.0 270 > th dose independent rect. 3 2
819 41.95 humidity 50.0 270 > th dose independent rect. 3 2
822 41.95 atmosphere 995.0 270 > th dose independent rect. 3 2
823 41.95 atmosphere 1010.0 270 < th dose independent rect. 3 2
825 41.95 radiation 20.0 270 < th dose independent rect. 3 2
830 41.95 temperature 10.0 270 > th dose independent rect. 5 22
834 41.95 humidity 50.0 90 > th dose dependent rect. 3 5
859 41.96 radiation 20.0 270 < th dose dependent rect. 3 2
863 41.97 radiation 1.0 270 < th dose independent rect. 3 2
871 41.97 wind 9.0 270 < th dose dependent rect. 1 5
879 41.98 precipitation 0.1 270 < th dose independent rect. 6 19
889 41.98 precipitation 0.1 270 < th dose dependent rect. 6 19
895 41.99 humidity 90.0 30 < th dose dependent rect. 8 4
920 42.03 wind 7.0 270 < th dose independent rect. 8 2
931 42.03 atmosphere 1015.0 270 < th dose dependent rect. 12 18
938 42.04 humidity 50.0 90 > th dose dependent rect. 3 13
961 42.06 precipitation 0.1 270 < th dose independent rect. 8 2
965 42.06 wind 9.0 270 < th dose independent rect. 21 14
967 42.06 precipitation 0.1 270 < th dose dependent rect. 8 2
997 42.10 atmosphere 995.0 270 > th dose independent rect. 8 2
998 42.10 atmosphere 1015.0 270 < th dose independent rect. 8 2