Os04g0476700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, typical subtype containing protein.
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Os04g0476700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, typical subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.3 | 0.259 | 11.1 | 0.723 | 0.558 | 0.441 | 0.0704 | -0.555 | 0.4 | 2.83 | 70.06 | 1317 | -- | -- |
| 30.75 | 0.258 | 11.1 | 0.652 | 0.587 | 0.435 | 0.143 | -- | 0.393 | 2.8 | 71.37 | 1296 | -- | -- |
| 30.13 | 0.256 | 11.1 | 0.717 | 0.566 | 0.457 | -- | -0.557 | 0.405 | 2.79 | 71.34 | 1299 | -- | -- |
| 30.77 | 0.258 | 11.1 | 0.624 | 0.579 | 0.432 | -- | -- | 0.379 | 2.75 | 71 | 1291 | -- | -- |
| 39.22 | 0.292 | 11.1 | 0.608 | -- | 0.375 | -- | 0.014 | 0.33 | -- | 73 | 149 | -- | -- |
| 37.2 | 0.286 | 11.1 | 0.541 | 0.502 | -- | 0.0398 | -- | 0.312 | 2.93 | -- | -- | -- | -- |
| 37.21 | 0.286 | 11.1 | 0.54 | 0.502 | -- | -- | -- | 0.312 | 2.92 | -- | -- | -- | -- |
| 38.93 | 0.292 | 11.1 | 0.591 | -- | 0.347 | -- | -- | 0.335 | -- | 74 | 1690 | -- | -- |
| 41.33 | 0.299 | 11.1 | -- | 0.55 | 0.423 | -- | -- | 0.348 | 2.74 | 72 | 1299 | -- | -- |
| 51.73 | 0.336 | 11.1 | 0.562 | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
| 44.9 | 0.313 | 11.1 | -- | 0.513 | -- | -- | -- | 0.252 | 2.92 | -- | -- | -- | -- |
| 48.14 | 0.324 | 11.1 | -- | -- | 0.334 | -- | -- | 0.27 | -- | 74 | 1690 | -- | -- |
| 60.05 | 0.362 | 11.1 | -- | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.24 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 2 |
| 2 | 28.59 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 5 | 28.88 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 10 | 29.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 16 | 29.43 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 18 | 29.46 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 11 |
| 21 | 29.48 | humidity | 70 | 1440 | > th | dose independent | sin | 15 | NA |
| 23 | 29.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 11 |
| 24 | 29.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 62 | 29.60 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 13 |
| 78 | 29.71 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 80 | 29.73 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 81 | 29.73 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 87 | 29.75 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 88 | 29.75 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 90 | 29.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 97 | 29.77 | humidity | 90 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 185 | 29.98 | humidity | 80 | 720 | < th | dose dependent | rect. | 12 | 9 |
| 247 | 30.05 | humidity | 70 | 1440 | < th | dose independent | sin | 16 | NA |
| 287 | 30.10 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 8 |
| 348 | 30.18 | radiation | 10 | 1440 | > th | dose independent | sin | 15 | NA |
| 359 | 30.19 | humidity | 80 | 720 | < th | dose dependent | sin | 16 | NA |
| 378 | 30.20 | radiation | 10 | 1440 | < th | dose dependent | sin | 16 | NA |
| 426 | 30.26 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 479 | 30.30 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 487 | 30.30 | humidity | 60 | 720 | > th | dose independent | rect. | 24 | 19 |
| 593 | 30.39 | humidity | 60 | 720 | > th | dose independent | rect. | 24 | 21 |
| 705 | 30.45 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 745 | 30.47 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 746 | 30.47 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 792 | 30.50 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 881 | 30.55 | humidity | 60 | 720 | > th | dose independent | rect. | 24 | 23 |
| 941 | 30.59 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 969 | 30.60 | humidity | 60 | 720 | > th | dose independent | rect. | 7 | 14 |
| 985 | 30.60 | humidity | 50 | 1440 | > th | dose dependent | sin | 19 | NA |