Os08g0511700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, typical subtype containing protein.
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Os08g0511700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, typical subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.6 | 0.26 | 9.84 | 0.426 | 0.633 | -0.0996 | -0.17 | 4.64 | -0.11 | 1.43 | 31.5 | 4027 | -- | -- |
| 31.3 | 0.261 | 9.93 | -0.245 | 0.645 | 0.387 | -0.0372 | -- | -0.15 | 1.07 | 29.7 | 5760 | -- | -- |
| 30.72 | 0.258 | 9.84 | 0.432 | 0.634 | -0.102 | -- | 4.63 | -0.109 | 1.4 | 31.44 | 4028 | -- | -- |
| 31.23 | 0.26 | 9.93 | -0.26 | 0.646 | 0.393 | -- | -- | -0.165 | 1.32 | 29.6 | 5762 | -- | -- |
| 55.04 | 0.346 | 9.82 | 0.501 | -- | -0.0474 | -- | 5 | -0.0782 | -- | 31.4 | 3940 | -- | -- |
| 38.67 | 0.292 | 9.94 | -0.141 | 0.671 | -- | -0.096 | -- | -0.183 | 1.45 | -- | -- | -- | -- |
| 38.7 | 0.291 | 9.94 | -0.138 | 0.671 | -- | -- | -- | -0.182 | 1.44 | -- | -- | -- | -- |
| 55.4 | 0.347 | 9.93 | -0.265 | -- | 0.48 | -- | -- | -0.168 | -- | 29.4 | 5443 | -- | -- |
| 32.98 | 0.267 | 9.92 | -- | 0.659 | 0.349 | -- | -- | -0.14 | 1.34 | 29.6 | 5778 | -- | -- |
| 66.37 | 0.381 | 9.93 | -0.111 | -- | -- | -- | -- | -0.168 | -- | -- | -- | -- | -- |
| 39.21 | 0.293 | 9.93 | -- | 0.669 | -- | -- | -- | -0.167 | 1.43 | -- | -- | -- | -- |
| 57.18 | 0.352 | 9.92 | -- | -- | 0.426 | -- | -- | -0.146 | -- | 29.48 | 5445 | -- | -- |
| 66.7 | 0.381 | 9.92 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 6 | 30.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 9 | 30.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 14 | 30.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 22 | 30.56 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 104 | 30.72 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 117 | 30.74 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 124 | 30.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 128 | 30.75 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 129 | 30.75 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 130 | 30.76 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |
| 146 | 30.76 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 149 | 30.76 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 170 | 30.79 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 189 | 30.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 249 | 30.88 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 252 | 30.88 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 255 | 30.89 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 337 | 30.93 | temperature | 30 | 4320 | > th | dose dependent | sin | 2 | NA |
| 503 | 31.00 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 597 | 31.01 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 627 | 31.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 7 |
| 669 | 31.05 | temperature | 30 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 672 | 31.06 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 681 | 31.07 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 683 | 31.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 684 | 31.07 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 688 | 31.07 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 692 | 31.07 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 732 | 31.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 859 | 31.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 918 | 31.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 933 | 31.26 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 960 | 31.27 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 996 | 31.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 9 |