Os02g0593600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0593600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, typical subtype containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.57	(0.0483)	R²	:	0.703
β₁	:	1.5	(0.178)	R²_dD	:	0.0506	R²_D	:	0.0522
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	4.01	(0.132)	R²_dE	:	0.596	R²_E	:	0.621
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	3.13	(0.485)	R²_dD*E	:	0.0211	R²_D*E	:	0.0384
γ₁	:	0.426	(0.103)	R²_dN8	:	0.0134	R²_N8	:	0.00805
σ	:	0.904
deviance	:	376.69
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	48.6
memory length	:	684
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	17.6
open length of G	:	1.33

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
356.57	0.887	4.56	1.79	0.912	3.36	3.27	0.232	0.5	21.7	51.71	715	17.1	2.17
356.52	0.879	4.56	1.8	0.921	3.36	3.42	--	0.498	21.8	52.05	714	17.1	2.15
373.59	0.9	4.55	1.58	0.826	3.39	--	2.84	0.501	21.4	49.91	712	17.1	2.15
400.29	0.932	4.55	1.7	0.923	3.39	--	--	0.494	21.5	52.68	709	17.2	2.2
376.69	0.904	4.57	1.5	--	4.01	--	3.13	0.426	--	48.6	684	17.6	1.33
519.3	1.07	4.59	1.83	3.13	--	3.3	--	0.542	23.3	--	--	--	--
565.75	1.11	4.6	1.7	3.11	--	--	--	0.528	23.4	--	--	--	--
401.47	0.933	4.58	1.69	--	4.03	--	--	0.375	--	48.84	685	17.6	1.22
460.1	0.999	4.58	--	0.84	3.47	--	--	0.366	21.8	55.1	674	17.8	1.3
1173.05	1.6	4.53	1.78	--	--	--	--	0.56	--	--	--	--	--
641.52	1.18	4.64	--	3.13	--	--	--	0.339	23.5	--	--	--	--
470.82	1.01	4.59	--	--	4.09	--	--	0.239	--	49.35	688	17.7	1.05
1256.37	1.65	4.57	--	--	--	--	--	0.363	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	358.68	humidity	50	720	> th	dose dependent	rect.	17	2
2	359.17	humidity	70	720	> th	dose independent	rect.	15	5
7	364.77	humidity	70	720	> th	dose independent	rect.	15	14
16	370.11	temperature	30	720	< th	dose independent	rect.	17	2
19	371.22	temperature	30	720	< th	dose independent	rect.	17	10
45	379.50	humidity	70	720	> th	dose independent	sin	14	NA
57	382.27	humidity	70	720	< th	dose independent	sin	14	NA
58	383.03	humidity	70	720	< th	dose independent	rect.	14	6
135	391.17	radiation	1	720	< th	dose dependent	rect.	7	20
148	392.54	humidity	80	1440	< th	dose dependent	rect.	17	2
158	393.42	humidity	80	720	< th	dose dependent	sin	14	NA
163	393.81	humidity	70	720	> th	dose independent	rect.	14	20
203	395.94	radiation	10	720	< th	dose dependent	rect.	15	4
207	396.52	humidity	80	720	< th	dose dependent	rect.	14	8
214	396.96	radiation	10	720	< th	dose dependent	rect.	16	11
215	396.99	humidity	90	720	< th	dose dependent	rect.	12	11
217	397.05	humidity	50	720	> th	dose dependent	sin	18	NA
261	397.96	radiation	1	720	< th	dose independent	rect.	7	20
273	398.30	temperature	25	1440	> th	dose dependent	rect.	15	3
356	400.76	radiation	10	1440	> th	dose independent	rect.	17	13
366	401.16	radiation	1	720	< th	dose independent	rect.	17	2
388	401.60	radiation	40	1440	< th	dose dependent	rect.	17	7
394	401.69	humidity	50	720	> th	dose dependent	rect.	9	18
414	402.02	radiation	10	1440	> th	dose dependent	rect.	17	13
450	402.70	radiation	1	720	< th	dose independent	rect.	15	4
459	402.80	radiation	40	1440	< th	dose dependent	rect.	17	10
482	403.10	radiation	1	720	< th	dose dependent	rect.	17	2
496	403.39	radiation	10	1440	> th	dose dependent	rect.	17	1
516	403.51	temperature	25	1440	> th	dose dependent	sin	19	NA
518	403.59	radiation	10	1440	> th	dose independent	rect.	17	1
550	403.88	radiation	1	720	< th	dose independent	rect.	17	10
559	404.01	humidity	50	720	> th	dose dependent	rect.	15	12
564	404.06	temperature	25	1440	> th	dose dependent	rect.	13	20
627	404.54	radiation	1	720	< th	dose dependent	rect.	7	12
649	404.72	temperature	25	1440	> th	dose dependent	rect.	6	14
741	405.25	radiation	1	720	< th	dose dependent	rect.	22	21
754	405.31	temperature	30	1440	> th	dose dependent	sin	15	NA
762	405.35	radiation	1	720	< th	dose independent	rect.	7	13
835	405.73	humidity	60	720	> th	dose dependent	rect.	11	12