Os04g0605300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, typical subtype containing protein.
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Os04g0605300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, typical subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.04 | 0.451 | 12 | -1.74 | 1.3 | 0.687 | 0.518 | -1.14 | -0.515 | 7.28 | 21.6 | 1316 | -- | -- |
| 94.52 | 0.453 | 12 | -1.59 | 1.29 | 0.602 | 0.731 | -- | -0.445 | 7.2 | 21.65 | 1297 | -- | -- |
| 92.58 | 0.448 | 12 | -1.73 | 1.31 | 0.7 | -- | -1.19 | -0.52 | 7.35 | 21.67 | 1299 | -- | -- |
| 95.5 | 0.455 | 12 | -1.58 | 1.29 | 0.602 | -- | -- | -0.439 | 7.23 | 21.67 | 1291 | -- | -- |
| 177.23 | 0.62 | 12.1 | -1.66 | -- | 0.702 | -- | -1.07 | -0.491 | -- | 23.57 | 1422 | -- | -- |
| 109.45 | 0.49 | 12 | -1.39 | 1.26 | -- | 0.652 | -- | -0.263 | 6.9 | -- | -- | -- | -- |
| 110.54 | 0.492 | 12 | -1.37 | 1.26 | -- | -- | -- | -0.265 | 6.94 | -- | -- | -- | -- |
| 179.89 | 0.625 | 12 | -1.55 | -- | 0.618 | -- | -- | -0.453 | -- | 25.01 | 1451 | -- | -- |
| 143.08 | 0.557 | 12 | -- | 1.18 | 0.661 | -- | -- | -0.37 | 7.26 | 29.49 | 8569 | -- | -- |
| 193.5 | 0.65 | 12 | -1.35 | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
| 160.32 | 0.592 | 11.9 | -- | 1.24 | -- | -- | -- | -0.112 | 7.01 | -- | -- | -- | -- |
| 214.65 | 0.682 | 12 | -- | -- | 0.786 | -- | -- | -0.343 | -- | 36.96 | 27572 | -- | -- |
| 241.45 | 0.725 | 12 | -- | -- | -- | -- | -- | -0.0917 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.49 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 3 | 89.83 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 6 | 89.85 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 8 | 89.86 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 47 | 90.73 | radiation | 20 | 1440 | < th | dose dependent | sin | 18 | NA |
| 64 | 90.91 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 117 | 91.21 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 125 | 91.28 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 127 | 91.29 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 135 | 91.30 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 144 | 91.31 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 252 | 91.81 | radiation | 1 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 253 | 91.81 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 388 | 92.18 | radiation | 1 | 1440 | > th | dose dependent | sin | 16 | NA |
| 410 | 92.22 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 433 | 92.27 | atmosphere | 1010 | 10 | < th | dose dependent | sin | 7 | NA |
| 448 | 92.29 | radiation | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 539 | 92.45 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 669 | 92.75 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 823 | 93.05 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 19 | 7 |
| 854 | 93.11 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 18 | 9 |
| 920 | 93.21 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 957 | 93.26 | humidity | 90 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 960 | 93.27 | radiation | 20 | 1440 | > th | dose independent | sin | 17 | NA |
| 966 | 93.28 | radiation | 10 | 1440 | > th | dose independent | sin | 20 | NA |
| 984 | 93.31 | radiation | 30 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 986 | 93.31 | radiation | 30 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 988 | 93.31 | radiation | 30 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 1000 | 93.31 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 23 |