BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0379400 Os08g0379400|AK069608
(390 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0379400 Similar to Quinone oxidoreductase-like protein 577 e-165
Os04g0359100 Alcohol dehydrogenase superfamily, zinc-contai... 105 6e-23
AK061134 103 2e-22
Os04g0359700 Alcohol dehydrogenase superfamily, zinc-contai... 97 2e-20
Os04g0358000 DNA glycosylase family protein 92 9e-19
Os01g0753100 Alcohol dehydrogenase superfamily, zinc-contai... 74 3e-13
Os09g0503100 Similar to Quinone-oxidoreductase QR1 (Fragment) 72 5e-13
Os02g0805600 Similar to Alcohol dehydrogenase, zinc-containing 70 2e-12
Os09g0502500 Alcohol dehydrogenase superfamily, zinc-contai... 70 3e-12
>Os08g0379400 Similar to Quinone oxidoreductase-like protein
Length = 390
Score = 577 bits (1486), Expect = e-165, Method: Compositional matrix adjust.
Identities = 307/390 (78%), Positives = 307/390 (78%)
Query: 1 MQSLLSSSVLANPCTTGSPLFPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MQSLLSSSVLANPCTTGSPLFPPT
Sbjct: 1 MQSLLSSSVLANPCTTGSPLFPPTAAKLAAAASVPVAAAARSGAIAAVSRRSASGGRCVV 60
Query: 61 XXXXXXXXXXXXXEAGEVPATMKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAA 120
EAGEVPATMKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAA
Sbjct: 61 AAASSSSPAVTTAEAGEVPATMKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAA 120
Query: 121 LNPVDAKRRAGKFKATDSPLPTVPGYDXXXXXXXXXXXXXXLKEGDEVYGNISEKALEGP 180
LNPVDAKRRAGKFKATDSPLPTVPGYD LKEGDEVYGNISEKALEGP
Sbjct: 121 LNPVDAKRRAGKFKATDSPLPTVPGYDVAGVVVKAGRKVKGLKEGDEVYGNISEKALEGP 180
Query: 181 KQSGSLAEYTAVEEKLLALKPKSLGFAQAAGLPLAIETAHEGLERAGFSAGKSILILGGA 240
KQSGSLAEYTAVEEKLLALKPKSLGFAQAAGLPLAIETAHEGLERAGFSAGKSILILGGA
Sbjct: 181 KQSGSLAEYTAVEEKLLALKPKSLGFAQAAGLPLAIETAHEGLERAGFSAGKSILILGGA 240
Query: 241 GGVGSLAIQLAKHVYGASKVAATASTPKLELLKSLGADVAIDYTKENFEDLPDKYDVVLD 300
GGVGSLAIQLAKHVYGASKVAATASTPKLELLKSLGADVAIDYTKENFEDLPDKYDVVLD
Sbjct: 241 GGVGSLAIQLAKHVYGASKVAATASTPKLELLKSLGADVAIDYTKENFEDLPDKYDVVLD 300
Query: 301 XXXXXXXXXXXXXXXXXXXXLTGAVVPPGFRFVVTSDGSVLEKLNPYLESGKVKPLVDPK 360
LTGAVVPPGFRFVVTSDGSVLEKLNPYLESGKVKPLVDPK
Sbjct: 301 AVGQGEKAVKVVKEGGSVVVLTGAVVPPGFRFVVTSDGSVLEKLNPYLESGKVKPLVDPK 360
Query: 361 GPFAFSQVVEAFSYLETGRATGKVVISPIP 390
GPFAFSQVVEAFSYLETGRATGKVVISPIP
Sbjct: 361 GPFAFSQVVEAFSYLETGRATGKVVISPIP 390
>Os04g0359100 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 332
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 144/341 (42%), Gaps = 42/341 (12%)
Query: 75 AGEVPATMKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAALNPVDAKRRAGKFK 134
AGE PATM+A Y YG G+ VP + D+VLV+V AA++N D + G +
Sbjct: 3 AGERPATMRAVQYSGYGGGAAALKFVEIPVPSVKKDEVLVKVEAASINQSDLMTQKGMMR 62
Query: 135 ATDSPLPTVPGYDXXXXXXXXXXXXXXLKEGDEVYGNISEKALEGPKQSGSLAEYTAVEE 194
P +P + K GD+V + +G LAEY A +
Sbjct: 63 PFHPKFPFIPVNNVSGEIVEVGSAVREFKVGDKVVSKLDF------WTAGGLAEYVATSD 116
Query: 195 KLLALKPKSLGFAQAAGLPLAIETAHEGLER-------AGFSAGKSILILGGAGGVGSLA 247
KL +P + A AAG+P+A TA + L+ +G S G +LI + GVG+ A
Sbjct: 117 KLTVARPAGISAADAAGVPVAGLTALQALKAIGTKFDGSGTSGGADVLITAASSGVGTYA 176
Query: 248 IQLAKHVYGASKVAATASTPKLELLKSLGADVAIDYTKENFEDLPD----KYDVVLDXXX 303
+QLAK G +V AT L L+ LGAD +DY L KYD +++
Sbjct: 177 VQLAK--LGNHRVTATCGARNLGLVAGLGADEVLDYKTPEGAALSSPSGKKYDYIVNISN 234
Query: 304 XXXXXXXXXXXXXXXXXLTGAVVPPGFRFVVTSDGSVLEK------------------LN 345
+ V P F V S ++ + L
Sbjct: 235 KNKWSVFKPRLSSHGRVVD---VAPNFGNFVASVVTLFSRRKKLSLVSLKMSKEDLGLLL 291
Query: 346 PYLESGKVKPLVDPKGPFAFSQVVEAFSYLETGRATGKVVI 386
+ GK++ +VD + P F + +A++ +G ATGKV++
Sbjct: 292 ELMREGKLRTVVDSRHP--FEKAADAWARSLSGHATGKVIV 330
>AK061134
Length = 329
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 145/332 (43%), Gaps = 35/332 (10%)
Query: 78 VPATMKAWAYDDYGD-GSVLKLNDAAAVPDIADDQVLVRVAAAALNPVDAK-------RR 129
+P T KA+ Y YG VL+ + P + V V+V +A+LNP+D K +
Sbjct: 5 LPETFKAYTYARYGPLEDVLECSQLTQQPLPSPSHVRVKVYSASLNPIDYKVVETYGAKY 64
Query: 130 AGKFKATDSPLPTVPGYDXXXXXXXXXXXXXXLKEGDEVYGNISEKALEGPKQSGSLAEY 189
G +SP G+D K GD VYG + A +GSL E+
Sbjct: 65 TGGTPTQESPFRI--GFDFAGEVVEVGAEATAFKVGDAVYGKAARDA------AGSLGEF 116
Query: 190 TAVEEKLLALKPKSLGFAQAAGLPLAIETAHEGL-ERAGFSAGKSILILGGAGGVGSLAI 248
+LLA KP ++ F AAG+P T+++ L E A G+ +L+LGG+ G I
Sbjct: 117 LVTHAELLAHKPTTVDFDHAAGVPGVALTSYQALREHAKLQPGERVLVLGGSSSTGIFGI 176
Query: 249 QLAKHVYGASKVAATASTPKLELLKSLGADVAIDYTKENFEDLPDKY--DVVLDXXXXXX 306
Q AK + + V AT ST + +++LG D IDY + + L + + DVV D
Sbjct: 177 QYAKAL--GAFVVATTSTKNVAFVQALGTDDVIDYRTQQWSKLVEAHSIDVVYDCGVEPT 234
Query: 307 XXXXXXXXXXXXXXLTGAVVPPGF-----RFVVTS-------DGSVLEKLNPYLESGKVK 354
+ G +F T G L + +++GK+K
Sbjct: 235 SWEDGAQHVLKKDTGRFVTLRRGLPHSDAKFGATYSAPFARPSGQDLAAIATLIDAGKIK 294
Query: 355 PLVDPKGPFAFSQVVEAFSYLETGRATGKVVI 386
+D P ++ EAF+ L+T RA GKV++
Sbjct: 295 LFIDSVFPLESTR--EAFARLKTERAVGKVIV 324
>Os04g0359700 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 396
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 147/337 (43%), Gaps = 36/337 (10%)
Query: 76 GEVPATMKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAALNPVDAKRRAGKFKA 135
G +PATM+A Y YG G+ + VP + +VL++V AA++NP+D + G +
Sbjct: 68 GGIPATMRAVQYTGYGGGAGALKHVEIPVPSVKKHEVLIKVEAASVNPIDWSIQKGMLRP 127
Query: 136 TDSPLPTVPGYDXXXXXXXXXXXXXXLKEGDEVYGNISEKALEGPKQSGSLAEYTAVEEK 195
P +P D LK GD+V ++ + G LAEY A E
Sbjct: 128 FLPKFPFIPVTDVAGEIVEAGSAVHELKVGDKVLSKLNF------WKGGGLAEYVAAPES 181
Query: 196 LLALKPKSLGFAQAAGLPLAIETAHEGLERAGFS------AGKSILILGGAGGVGSLAIQ 249
L ++P + AAGLP+A TA + L G G ++LI +GGVG+ A+Q
Sbjct: 182 LTVVRPAGVSAVDAAGLPVAGLTALKALMSIGTKFDGTGGTGANVLITAASGGVGTYAVQ 241
Query: 250 LAKHVYGASKVAATASTPKLELLKSLGADVAIDYTKENFEDLP-----DKYDVVLDXXXX 304
LAK G +V AT ++L++SLGAD +DY L +KYD +++
Sbjct: 242 LAK--LGNHRVTATCGARNMDLVRSLGADEVLDYNTPQGAALTSSASDEKYDYIINTAMN 299
Query: 305 XXXXXXXXXXXXXXXXLT-----GAVVPPGFRFVVTSDGSVL-------EKLNPYLE--- 349
+ G V +++ E++ +E
Sbjct: 300 VNWSAMKPTLSSRGRVVDITPNPGNYVAAMLTMFARKKITMMALMSLGKEEMRFLMELVG 359
Query: 350 SGKVKPLVDPKGPFAFSQVVEAFSYLETGRATGKVVI 386
GK++ +VD + P F + EA+ G ATGKV++
Sbjct: 360 EGKLRTVVDSRCP--FEKAAEAWEKSMGGHATGKVIV 394
>Os04g0358000 DNA glycosylase family protein
Length = 1310
Score = 91.7 bits (226), Expect = 9e-19, Method: Composition-based stats.
Identities = 92/339 (27%), Positives = 140/339 (41%), Gaps = 39/339 (11%)
Query: 75 AGEVPATMKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAALNPVDAKRRAGKFK 134
AG PATM+A Y YG G+ VP + +++L+++ AA+LN D + + G +
Sbjct: 982 AGGRPATMRAVQYGGYGGGAATLKFVEIPVPSLKKNEILIKIEAASLNQADWRIQKGLMR 1041
Query: 135 ATDSPLPTVPGYDXXXXXXXXXXXXXXLKEGDEVYGNISEKALEGPKQSGSLAEYTAVEE 194
P +P D K GD+V ++ ++G LAEY A E
Sbjct: 1042 PFHPKFPFIPVTDVSGEVIEVGSAIHEFKVGDKVVSKLN------LWKAGGLAEYVAASE 1095
Query: 195 KLLALKPKSLGFAQAAGLPLAIETAHEGLERAGFS-----AGKSILILGGAGGVGSLAIQ 249
+P + A AAGLP+A TA + L G G +LI + GVG+ A+Q
Sbjct: 1096 SDTVSRPAGISAADAAGLPVAGLTALQALSSIGTKFDGSGTGADVLITAASSGVGTYAVQ 1155
Query: 250 LAKHVYGASKVAATASTPKLELLKSLGADVAIDYTKENFEDLPD----KYDVVLDXXXXX 305
LAK G +V T L+L+ SLGAD +DY L KYD +++
Sbjct: 1156 LAK--LGNHRVTTTCGARNLDLVGSLGADEVLDYATPEGAALASPSGRKYDYIINLTDRG 1213
Query: 306 XXXXXXXXXXXXXXXLTGAVVPPGFRFVVTSDGSVLEK------------------LNPY 347
+ V P + S ++ + L
Sbjct: 1214 KWSVFRPQLSSNGGRVVD--VSPNLGNFLASVMTLFSRRKRLSLVILTLGKKELGFLLEL 1271
Query: 348 LESGKVKPLVDPKGPFAFSQVVEAFSYLETGRATGKVVI 386
+ GK+K +VD + P F + EA+ +G ATGKV++
Sbjct: 1272 MREGKLKTVVDSRHP--FEKAAEAWERSMSGHATGKVIV 1308
>Os01g0753100 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 365
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 10/214 (4%)
Query: 90 YGDGSVLKLNDAAAVPDIADDQVLVRVAAAALNPVDAKRRAGKFKATDSP-LPTVPGYDX 148
+G VL++ VPD+ VLVR A ++NP+D + R+G ++ P LP + G D
Sbjct: 38 FGGPEVLEVRQGVPVPDLKPGDVLVRARAVSINPLDLRMRSGYGRSIFEPVLPLIIGRDI 97
Query: 149 XXXXXXXXXXXXXLKEGDEVYGNISEKALEGPKQSGSLAEYTAVEEKLLALKPKSLGFAQ 208
G EV+G + A+ G+ +Y + + L KP +L +
Sbjct: 98 SGEVAATGTSVSSFTIGQEVFGALHPTAIR-----GTYTDYAILSQDELTSKPSTLSHVE 152
Query: 209 AAGLPLAIETAHEGLE-RAGFSAGKSILILGGAGGVGSLAIQLAKHVYGASKVAATASTP 267
A+ +P A TA L A S G+ +L++ GG + V V+AT T
Sbjct: 153 ASAIPFAALTAWRALHGTARISEGQRVLVI--GGGGAVGLAAVQLAVAAGCSVSATCGTK 210
Query: 268 KLELLKSLGADVAIDYTKENFED-LPDKYDVVLD 300
+E + + GA+ AIDYT E+ E + K+D VLD
Sbjct: 211 SIEQVLAAGAEKAIDYTAEDTESAVKGKFDAVLD 244
>Os09g0503100 Similar to Quinone-oxidoreductase QR1 (Fragment)
Length = 346
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 132/343 (38%), Gaps = 46/343 (13%)
Query: 79 PATMKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAALNPVDAKRRAGKFKA-TD 137
P TM+A YD YG G + +P + ++L+++ AA++NP+D K + G +
Sbjct: 9 PKTMRAVQYDKYGGGPEGLKHVEVPIPAPKEGELLIKMEAASINPIDWKIQKGMLRLFLP 68
Query: 138 SPLPTVPGYDXXXXXXXXXXXXXXLKEGDEVYGNISEKALEGPKQSGSLAEYTAVEEKLL 197
P +P D K GD+V ++ P G LAEY L
Sbjct: 69 KKFPFIPVGDLSGEVVELGGGVSGFKPGDKVV------SMSFP-NCGGLAEYAVAPASLT 121
Query: 198 ALKPKSLGFAQAAGLPLAIETAHEGLERAGFS------------AGKSILILGGAGGVGS 245
+P + A A LP A +A + L+ AG K++L+ +GGVG
Sbjct: 122 VARPPEVSAADGATLPAAAGSALQQLKAAGVRFDADADAAAAAGGPKNVLVTAASGGVGH 181
Query: 246 LAIQLAKHVYGASKVAATASTPKLELLK-SLGADVAIDYTKENFEDLPDKYDVVLDXXXX 304
A+QLAK V AT L ++ LGAD A+DY + L D
Sbjct: 182 YAVQLAK--LAGLHVTATCGARNLAFVRDGLGADEALDYRTPDGAALRSPSGRRYDAVAH 239
Query: 305 XXXXXXXXXXXXXXXXLTGAVV--PPGFRFVVTS-------------------DGSVLEK 343
G VV PG V S +E
Sbjct: 240 CAPPAPWPVFRDALADAGGVVVDLTPGVAATVRSFLHRVTFSKKRLVPLILMPKKEEMEW 299
Query: 344 LNPYLESGKVKPLVDPKGPFAFSQVVEAFSYLETGRATGKVVI 386
L + GK+K +D K P + +Q EA++ G ATGK+V+
Sbjct: 300 LVDMAKQGKLKTTIDSKYPLSRAQ--EAWAKSMEGHATGKIVV 340
>Os02g0805600 Similar to Alcohol dehydrogenase, zinc-containing
Length = 328
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 102/229 (44%), Gaps = 22/229 (9%)
Query: 82 MKAWAYDDYGDGSVLKLNDAA-AVPDIADDQVLVRVAAAALNPVDAKRRAGKFKATDSPL 140
M+A G VL+ D +P + +VLV V+AA +N D +R G++ A
Sbjct: 1 MRAVVIARAGGPEVLEERDVGEGLPPPGEGEVLVGVSAAGVNRADTVQRQGRYPAPPGAS 60
Query: 141 PTVPGYDXXXXXXXXXXXX-XXLKEGDEVYGNISEKALEGPKQSGSLAEYTAVEEKLLAL 199
P PG + GD+V +S SG AE V L
Sbjct: 61 PY-PGLECSGTILALGPNVPSRWAVGDQVCALLS---------SGGYAEKVVVPAGQLLP 110
Query: 200 KPKSLGFAQAAGLP-LAIETAHEGLERAGFSAGKSILILGGAGGVGSLAIQLAKHVYGAS 258
P+ + AAGLP +A + S +S LI GG+ G+G+ AIQ+AKH+
Sbjct: 111 VPEGVSLTDAAGLPEVACTVWSTVFVTSHLSPSESFLIHGGSSGIGTFAIQIAKHL--GI 168
Query: 259 KVAATA-STPKLELLKSLGADVAIDYTKENF-----EDLPDK-YDVVLD 300
KV TA S KL K LGADV I+Y E+F E+ K DV+LD
Sbjct: 169 KVFVTAGSEEKLAACKGLGADVCINYKTEDFVARVKEETNGKGVDVILD 217
>Os09g0502500 Alcohol dehydrogenase superfamily, zinc-containing protein
Length = 340
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 99/234 (42%), Gaps = 24/234 (10%)
Query: 82 MKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAALNPVDAKRRAGKFKA-TDSPL 140
M+A YD YG G+ + +P +VL+++ A ++N VD K + G + +
Sbjct: 8 MRAVQYDKYGGGAQALKHVEVPIPTPKKGEVLIKMEAGSINQVDWKFQKGVARPFMPNKF 67
Query: 141 PTVPGYDXXXXXXXXXXXXXXLKEGDEVYGNISEKALEGPKQSGSLAEYTAVEEKLLALK 200
P +P YD K GD+V A+ P G LAEY + A +
Sbjct: 68 PFIPVYDLAGEVVELGRGVSSFKVGDKVI------AINFPG-GGGLAEYAVAQASRTAPR 120
Query: 201 PKSLGFAQAAGLPLAIETAHEGLERAGFS----------AGKSILILGGAGGVGSLAIQL 250
P + A A LP+A TA L AG S A K++L+ +GGVG A+QL
Sbjct: 121 PPEVSAAVGACLPIAAVTALVALRTAGVSLDAGDGGGGGAKKNVLVTAASGGVGHFAVQL 180
Query: 251 AKHVYGASKVAATASTPKLELLKSLGADVAIDYTKENFEDLPD----KYDVVLD 300
A +V AT L+ LGAD +DY L +YD V+
Sbjct: 181 AS--AAGHRVTATCGARNAGLVGGLGADKVLDYATPEGAALRSPSGRRYDAVVH 232
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,128,755
Number of extensions: 414772
Number of successful extensions: 1058
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1041
Number of HSP's successfully gapped: 10
Length of query: 390
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 287
Effective length of database: 11,657,759
Effective search space: 3345776833
Effective search space used: 3345776833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)