Os09g0502500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alcohol dehydrogenase superfamily, zinc-containing protein.
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Os09g0502500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alcohol dehydrogenase superfamily, zinc-containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 559.61 | 1.11 | 7.7 | -0.335 | 0.823 | 3.62 | -2.58 | 2.25 | -0.144 | 3.3 | 28.8 | 10 | -- | -- |
| 565.17 | 1.11 | 7.65 | 0.0556 | 0.857 | 3.57 | -1.79 | -- | -0.0475 | 3.36 | 28.81 | 8 | -- | -- |
| 575.81 | 1.13 | 7.66 | -0.0162 | 0.901 | 3.44 | -- | 0.366 | -0.0804 | 2.99 | 28.56 | 12 | -- | -- |
| 574.6 | 1.12 | 7.65 | 0.0525 | 0.888 | 3.47 | -- | -- | -0.0528 | 2.99 | 28.62 | 7 | -- | -- |
| 603.73 | 1.14 | 7.63 | 0.203 | -- | 4.28 | -- | 0.469 | 0.0943 | -- | 29.19 | 10 | -- | -- |
| 739.05 | 1.27 | 7.82 | -0.807 | 2.02 | -- | -1.09 | -- | -0.781 | 2.55 | -- | -- | -- | -- |
| 743.24 | 1.28 | 7.82 | -0.779 | 2.01 | -- | -- | -- | -0.774 | 2.49 | -- | -- | -- | -- |
| 604.13 | 1.14 | 7.62 | 0.283 | -- | 4.28 | -- | -- | 0.11 | -- | 29.22 | 10 | -- | -- |
| 574.69 | 1.12 | 7.66 | -- | 0.893 | 3.46 | -- | -- | -0.0603 | 2.97 | 28.6 | 7 | -- | -- |
| 981.07 | 1.46 | 7.81 | -0.693 | -- | -- | -- | -- | -0.724 | -- | -- | -- | -- | -- |
| 759.22 | 1.29 | 7.8 | -- | 2 | -- | -- | -- | -0.688 | 2.49 | -- | -- | -- | -- |
| 606.08 | 1.15 | 7.63 | -- | -- | 4.2 | -- | -- | 0.069 | -- | 29.24 | 10 | -- | -- |
| 993.75 | 1.47 | 7.79 | -- | -- | -- | -- | -- | -0.647 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 550.54 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 2 | 557.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 3 | 558.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 5 | 559.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 6 | 560.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 8 | 563.05 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 9 | 563.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 10 | 563.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 11 | 563.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 17 | 565.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 21 | 567.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 22 | 568.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 24 | 568.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 26 | 570.18 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 29 | 571.24 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 32 | 572.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 33 | 572.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 34 | 572.97 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 35 | 573.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 39 | 575.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 44 | 576.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 46 | 576.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 53 | 577.49 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 68 | 579.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 82 | 581.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 87 | 582.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 89 | 582.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 90 | 582.87 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 96 | 583.23 | temperature | 25 | 1440 | < th | dose independent | sin | 21 | NA |
| 101 | 583.76 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 112 | 584.15 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 127 | 584.60 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 129 | 584.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 15 |
| 132 | 584.76 | temperature | 25 | 1440 | > th | dose independent | sin | 21 | NA |
| 140 | 585.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 17 |
| 158 | 585.89 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 223 | 588.15 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 267 | 589.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 305 | 590.82 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 353 | 592.16 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 367 | 592.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 381 | 592.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 405 | 593.44 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 417 | 593.59 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 462 | 594.55 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 511 | 595.59 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 23 |
| 532 | 595.96 | wind | 1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 541 | 596.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 557 | 596.47 | wind | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 596 | 597.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 13 |
| 612 | 597.63 | temperature | 25 | 10 | < th | dose dependent | sin | 21 | NA |
| 647 | 598.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 648 | 598.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 675 | 598.86 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 23 |
| 691 | 599.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 702 | 599.24 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 728 | 599.58 | temperature | 25 | 1440 | < th | dose dependent | sin | 20 | NA |
| 730 | 599.59 | temperature | 25 | 90 | < th | dose dependent | sin | 21 | NA |
| 819 | 600.78 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 864 | 601.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 909 | 602.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 918 | 602.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 926 | 602.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 933 | 602.29 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 949 | 602.35 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 969 | 602.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 977 | 602.70 | temperature | 25 | 90 | > th | dose independent | rect. | 24 | 23 |