Os08g0379400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Quinone oxidoreductase-like protein.
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Os08g0379400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Quinone oxidoreductase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.68 | 0.369 | 15.5 | -0.225 | 0.385 | 0.654 | 1.28 | 0.0417 | -0.401 | 7.85 | 25.21 | 216 | -- | -- |
| 61.69 | 0.366 | 15.5 | -0.237 | 0.385 | 0.656 | 1.28 | -- | -0.405 | 7.87 | 25.24 | 217 | -- | -- |
| 65.5 | 0.377 | 15.5 | -0.276 | 0.451 | 0.729 | -- | -0.214 | -0.456 | 6.77 | 25.3 | 219 | -- | -- |
| 65.5 | 0.377 | 15.5 | -0.214 | 0.414 | 0.689 | -- | -- | -0.427 | 6.45 | 25.5 | 157 | -- | -- |
| 71.78 | 0.395 | 15.5 | -0.0855 | -- | 0.531 | -- | 0.151 | -0.27 | -- | 25.2 | 128 | -- | -- |
| 85.98 | 0.435 | 15.4 | -0.0633 | 0.267 | -- | 1.13 | -- | -0.129 | 11.6 | -- | -- | -- | -- |
| 90.95 | 0.447 | 15.4 | -0.0144 | 0.28 | -- | -- | -- | -0.122 | 13 | -- | -- | -- | -- |
| 71.31 | 0.393 | 15.5 | -0.163 | -- | 0.537 | -- | -- | -0.359 | -- | 25.29 | 133 | -- | -- |
| 66.58 | 0.38 | 15.5 | -- | 0.381 | 0.688 | -- | -- | -0.406 | 6.31 | 25.5 | 146 | -- | -- |
| 95.81 | 0.457 | 15.4 | -0.025 | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
| 90.95 | 0.446 | 15.4 | -- | 0.28 | -- | -- | -- | -0.12 | 13.1 | -- | -- | -- | -- |
| 71.94 | 0.395 | 15.5 | -- | -- | 0.526 | -- | -- | -0.335 | -- | 25.42 | 137 | -- | -- |
| 95.83 | 0.457 | 15.4 | -- | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.64 | temperature | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 3 | 54.23 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 20 | 55.42 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 26 | 55.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 46 | 56.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 52 | 57.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 57 | 57.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 81 | 57.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 111 | 58.40 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 137 | 58.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 140 | 59.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 142 | 59.07 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 180 | 59.71 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 256 | 60.55 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 15 |
| 284 | 60.89 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 22 |
| 290 | 60.93 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 21 |
| 297 | 60.98 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 16 |
| 310 | 61.09 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 326 | 61.28 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 385 | 61.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 386 | 61.73 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 19 |
| 403 | 61.84 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 6 |
| 426 | 61.95 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 8 |
| 440 | 62.01 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 14 |
| 450 | 62.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 464 | 62.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 7 |
| 513 | 62.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 532 | 62.43 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 12 |
| 590 | 62.64 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 598 | 62.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 649 | 62.85 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 21 |
| 693 | 62.95 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 16 |
| 697 | 62.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 711 | 63.00 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 715 | 63.04 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 11 |
| 724 | 63.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 741 | 63.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 750 | 63.15 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 766 | 63.20 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 794 | 63.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 816 | 63.33 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 835 | 63.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 854 | 63.45 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 868 | 63.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 899 | 63.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 919 | 63.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 926 | 63.68 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 23 |
| 957 | 63.75 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 958 | 63.75 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 972 | 63.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 976 | 63.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 988 | 63.82 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 989 | 63.82 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 994 | 63.82 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |