Os09g0503100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Quinone-oxidoreductase QR1 (Fragment).
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Os09g0503100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Quinone-oxidoreductase QR1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.52 | 0.48 | 12.4 | -1.37 | 0.879 | -1.81 | -0.822 | -1.68 | -0.496 | 12.8 | 59.53 | 773 | 15.8 | 4.02 |
| 108.63 | 0.485 | 12.5 | -1.43 | 0.986 | -1.75 | 0.126 | -- | -0.501 | 12.5 | 62.26 | 780 | 15.9 | 4 |
| 105.44 | 0.478 | 12.4 | -1.41 | 0.904 | -1.79 | -- | -1.03 | -0.5 | 12.6 | 59.44 | 784 | 15.8 | 3.95 |
| 107.76 | 0.483 | 12.4 | -1.48 | 0.684 | -1.94 | -- | -- | -0.469 | 12.6 | 54.48 | 780 | 15.7 | 4.22 |
| 104.23 | 0.475 | 12.5 | -1.52 | -- | -2.49 | -- | -0.526 | -0.502 | -- | 39.25 | 776 | 15.5 | 4.65 |
| 164.33 | 0.601 | 12.4 | -1.5 | 1.89 | -- | 0.43 | -- | -0.533 | 12.5 | -- | -- | -- | -- |
| 165.11 | 0.602 | 12.4 | -1.48 | 1.89 | -- | -- | -- | -0.531 | 12.5 | -- | -- | -- | -- |
| 105.86 | 0.479 | 12.5 | -1.51 | -- | -2.49 | -- | -- | -0.488 | -- | 38.44 | 784 | 15.5 | 4.57 |
| 165.81 | 0.6 | 12.4 | -- | 0.585 | -2.04 | -- | -- | -0.368 | 12.2 | 56.46 | 747 | 16.6 | 3.58 |
| 388.34 | 0.921 | 12.5 | -1.54 | -- | -- | -- | -- | -0.562 | -- | -- | -- | -- | -- |
| 222.8 | 0.698 | 12.4 | -- | 1.91 | -- | -- | -- | -0.366 | 12.5 | -- | -- | -- | -- |
| 165.11 | 0.598 | 12.4 | -- | -- | -2.46 | -- | -- | -0.319 | -- | 38.5 | 773 | 15.9 | 4.27 |
| 451.27 | 0.992 | 12.4 | -- | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.19 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 21 | 112.39 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 22 | 112.49 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 25 | 112.87 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 11 |
| 32 | 113.40 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 14 |
| 34 | 113.62 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 13 |
| 36 | 113.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 76 | 116.39 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 79 | 116.62 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 10 |
| 124 | 118.21 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 3 |
| 132 | 118.37 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 139 | 118.60 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 9 |
| 160 | 119.13 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 189 | 120.39 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 212 | 120.79 | humidity | 70 | 720 | > th | dose independent | sin | 15 | NA |
| 222 | 120.98 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 259 | 121.58 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 7 |
| 295 | 121.87 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 18 |
| 323 | 122.16 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 329 | 122.19 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 6 |
| 382 | 122.76 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 439 | 123.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 468 | 123.71 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 506 | 124.08 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 536 | 124.37 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 561 | 124.65 | humidity | 80 | 720 | > th | dose independent | sin | 20 | NA |
| 577 | 124.79 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 596 | 124.94 | humidity | 70 | 720 | < th | dose independent | sin | 15 | NA |
| 710 | 125.71 | humidity | 90 | 720 | < th | dose dependent | sin | 17 | NA |
| 719 | 125.76 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 20 |
| 739 | 125.90 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 4 |
| 774 | 126.15 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 817 | 126.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 833 | 126.43 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 905 | 126.82 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 969 | 127.13 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 13 |