BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0503100 Os09g0503100|AK108272
(346 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G13010.1 | chr4:7600682-7602567 FORWARD LENGTH=330 341 4e-94
AT1G23740.1 | chr1:8398245-8399656 REVERSE LENGTH=387 82 5e-16
AT1G49670.2 | chr1:18381591-18386021 REVERSE LENGTH=653 62 4e-10
AT5G61510.1 | chr5:24737084-24738975 REVERSE LENGTH=407 51 8e-07
AT3G15090.1 | chr3:5076847-5078870 FORWARD LENGTH=367 51 9e-07
AT4G21580.1 | chr4:11475822-11477514 FORWARD LENGTH=326 49 4e-06
>AT4G13010.1 | chr4:7600682-7602567 FORWARD LENGTH=330
Length = 329
Score = 341 bits (874), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 177/333 (53%), Positives = 225/333 (67%), Gaps = 9/333 (2%)
Query: 10 KTMRAVQYDKYGGGPEGLKHVEVPIPAPKEGELLIKMEAASINPIDWKIQKGMLRLFLPK 69
K M A+QY+ YGGG GL+HV+VP+P PK E+ +K+EA S+NP+DWKIQKGM+R FLP+
Sbjct: 4 KLMHALQYNSYGGGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPR 63
Query: 70 KFPFIPXXXXXXXXXXXXXXXXXFKPGDKVVS-MSFPNCGGLAEYAVAPASLTVARPPEV 128
KFP IP FK GDKVV+ +S GGLAE+AVA LTV RP EV
Sbjct: 64 KFPCIPATDVAGEVVEVGSGVKNFKAGDKVVAVLSHLGGGGLAEFAVATEKLTVKRPQEV 123
Query: 129 XXXXXXXXXXXXXXXXQQLKXXXXXXXXXXXXXXXXXXPKNVLVTAASGGVGHYAVQLAK 188
Q L N+LVTAASGGVGHYAVQLAK
Sbjct: 124 GAAEAAALPVAGLTALQALTNPAGLKLDGTGKKA------NILVTAASGGVGHYAVQLAK 177
Query: 189 LAGLHVTATCGARNLAFVRDGLGADEALDYRTPDGAALRSPSGRRYDAVAHCAPPAPWPV 248
LA HVTATCGARN+ FV+ LGADE LDY+TP+GAAL+SPSG++YDAV HCA P+ V
Sbjct: 178 LANAHVTATCGARNIEFVKS-LGADEVLDYKTPEGAALKSPSGKKYDAVVHCANGIPFSV 236
Query: 249 FRDALADAGGVVVDLTPGVAATVRSFLHRVTFSKKRLVPLILMPKKEEMEWLVDMAKQGK 308
F L++ G V+D+TPG A + ++T SKK+LVPL+L+PK E +E++V++ K+GK
Sbjct: 237 FEPNLSE-NGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVKEGK 295
Query: 309 LKTTIDSKYPLSRAQEAWAKSMEGHATGKIVVE 341
+KT IDSK+PLS+A++AWAKS++GHATGKI+VE
Sbjct: 296 VKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVE 328
>AT1G23740.1 | chr1:8398245-8399656 REVERSE LENGTH=387
Length = 386
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 133/346 (38%), Gaps = 52/346 (15%)
Query: 9 PKTMRAVQYDKYGGGPEGLKHVEVPIPAPKEGELLIKMEAASINPIDWKIQKGMLRLFLP 68
PK M+A Y YGG + +P KE ++LIK+ AA++NP+D K ++G +
Sbjct: 75 PKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKA-TD 133
Query: 69 KKFPFIPXXXXXXXXXXXXXXXXXFKPGDKVVS------MSFP-NCGGLAEYAVAPASLT 121
P +P K GD+V + + P G LAEY L
Sbjct: 134 SPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLL 193
Query: 122 VARPPEVXXXXXXXXXXXXXXXXQQLKXXXXXXXXXXXXXXXXXXPKNVLVTAASGGVGH 181
+P + + L K++LV +GGVG
Sbjct: 194 ALKPKNIDFAQAAGLPLAIETADEGL------------VRTEFSAGKSILVLNGAGGVGS 241
Query: 182 YAVQLAK--LAGLHVTATCGARNLAFVRDGLGADEALDYRTPDGAALRSPSGRRYDAVAH 239
+QLAK V AT L VR LGAD A+DY + L +DA+
Sbjct: 242 LVIQLAKHVYGASKVAATASTEKLELVR-SLGADLAIDYTKENIEDLPDKYDVVFDAIGM 300
Query: 240 CAPPAPWPVFRDALADAGGVVVDLTPGVAATVRSFLHRVTFSK---KRLVPLILMPKKEE 296
C + GG VV LT V T F VT + K+L P I
Sbjct: 301 CDKAV-------KVIKEGGKVVALTGAV--TPPGFRFVVTSNGDVLKKLNPYI------- 344
Query: 297 MEWLVDMAKQGKLKTTIDSK--YPLSRAQEAWAKSMEGHATGKIVV 340
+ GK+K +D K +P SR +A++ HATGK+VV
Sbjct: 345 --------ESGKVKPVVDPKGPFPFSRVADAFSYLETNHATGKVVV 382
>AT1G49670.2 | chr1:18381591-18386021 REVERSE LENGTH=653
Length = 652
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 21/191 (10%)
Query: 168 KNVLVTAASGGVGHYAVQLAKLAGLHVTATCGARNLAFVRDGLGADEALDYRTPD-GAAL 226
+ VLVTAA+GG G +AVQLAKL+G V ATCG A + LG D +DY++ + L
Sbjct: 452 ETVLVTAAAGGTGQFAVQLAKLSGNKVIATCGGSEKAKLLKELGVDRVIDYKSENIKTVL 511
Query: 227 RSPSGRRYDAVAHCAPPAPWPVFRDALADAGGVVVDLTPGVAATVRSF----------LH 276
+ + + + + + +ALA G ++V G+ + + L
Sbjct: 512 KKEFPKGVNIIYESVGGQMFDMCLNALAVYGRLIV---IGMISQYQGEKGWEPAKYPGLC 568
Query: 277 RVTFSKKRLVPLILMPK-----KEEMEWLVDMAKQGKLKTTIDSK--YPLSRAQEAWAKS 329
+K + V + + K+ ++ L ++ GKLK ID K L+ +A
Sbjct: 569 EKILAKSQTVAGFFLVQYSQLWKQNLDKLFNLYALGKLKVGIDQKKFIGLNAVADAVEYL 628
Query: 330 MEGHATGKIVV 340
G +TGK+VV
Sbjct: 629 HSGKSTGKVVV 639
>AT5G61510.1 | chr5:24737084-24738975 REVERSE LENGTH=407
Length = 406
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 119/345 (34%), Gaps = 59/345 (17%)
Query: 22 GGPEGLKHVEVPIPAPKEGELLIKMEAASINPIDWKIQKGMLRLFLPKKFPFIPXXXXXX 81
GGPE LK +V + PKEGE+ +K +A +N ID +KG+ + P PF P
Sbjct: 93 GGPEVLKWEDVEVGEPKEGEIRVKNKAIGLNFIDVYFRKGVYK---PASMPFTPGMEAVG 149
Query: 82 XXXXXXXXXXXFKPGDKVVSMSFPNCGGLAEYAVAPASLTVARPPEVXXXXXXXXXXXXX 141
GD V P G AE + PA V P +
Sbjct: 150 EVVAVGSGLTGRMIGDLVAYAGNP-MGAYAEEQILPADKVVPVPSSIDPIVAASIMLKGM 208
Query: 142 XXXQQLKXXXXXXXXXXXXXXXXXXPKNVLVTAASGGVGHYAVQLAKLAGLHVTATCGAR 201
L+ +LV AA+GGVG Q A G V T
Sbjct: 209 TAQFLLRRCFKVEPG-----------HTILVHAAAGGVGSLLCQWANALGATVIGTVSTN 257
Query: 202 NLAFVRDGLGADEALDYRTPDGAALRS--PSGRRYDAVAHCAPPAPWPVFRDALADAGGV 259
A G + Y+ D + + SG+ + V D++
Sbjct: 258 EKAAQAKEDGCHHVIMYKNEDFVSRVNDITSGKGVNVV------------YDSVGK---- 301
Query: 260 VVDLTPGVAATVRSFLHRVTFSKKRLVP------------LIL-----MPKKEEMEWLVD 302
D G A ++S + V+F + P L L M E + L++
Sbjct: 302 --DTFKGSLACLKSRGYMVSFGQSSGSPDPIPLSDLAPKSLFLTRPSMMHYNETRDELLE 359
Query: 303 MAKQ-------GKLKTTIDSKYPLSRAQEAWAKSMEGHATGKIVV 340
A + G LK ++ KYPLSR +A A +G +V+
Sbjct: 360 CAGEVFANVTSGILKARVNHKYPLSRVADAHADLENRITSGSVVL 404
>AT3G15090.1 | chr3:5076847-5078870 FORWARD LENGTH=367
Length = 366
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 84/216 (38%), Gaps = 22/216 (10%)
Query: 13 RAVQYDKYGGGPEGLKHVE-VPIPAPKEGELLIKMEAASINPIDWKIQKGMLRLFLPKKF 71
RAV ++GG PE + E VP+P E+L+K +A S+NP+D +I+ G R
Sbjct: 33 RAVILPRFGG-PEVFELRENVPVPNLNPNEVLVKAKAVSVNPLDCRIRAGYGRSVFQPHL 91
Query: 72 PFIPXXXXXXXXXXXXXXXXXFKPGDKVVSMSFPNC--GGLAEYAVAPASLTVARPPEVX 129
P I K G +V P G +Y + +P +
Sbjct: 92 PIIVGRDVSGEVAAIGTSVKSLKVGQEVFGALHPTALRGTYTDYGILSEDELTEKPSSIS 151
Query: 130 XXXXXXXXXXXXXXXQQLKXXXXXXXXXXXXXXXXXXPKNVLVTAASGGVGHYAVQLAKL 189
+ LK + +LV G VG A+QLA
Sbjct: 152 HVEASAIPFAALTAWRALKSNARITEG-----------QRLLVFGGGGAVGFSAIQLAVA 200
Query: 190 AGLHVTATCGARNLAFVRDGL---GADEALDYRTPD 222
+G HVTA+C + +D + GA++A+DY T D
Sbjct: 201 SGCHVTASCVGQT----KDRILAAGAEQAVDYTTED 232
>AT4G21580.1 | chr4:11475822-11477514 FORWARD LENGTH=326
Length = 325
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 16/187 (8%)
Query: 168 KNVLVTAASGGVGHYAVQLAKLAGLHVTATCGA-RNLAFVRDGLGADEALDYRTPDGAA- 225
++ L+ S G+G +A+Q+AK G+ V T G+ LA ++ LGAD ++Y+T D A
Sbjct: 141 ESFLIHGGSSGIGTFAIQIAKHLGVRVFVTAGSDEKLAACKE-LGADVCINYKTEDFVAK 199
Query: 226 -LRSPSGRRYDAVAHCAPPAPWPVFRDALA-DAGGVVVDLTPGVAATVR--SFL-HRVTF 280
G+ D + C D+L D ++ L G A ++ S L R+T
Sbjct: 200 VKAETDGKGVDVILDCIGAPYLQKNLDSLNFDGRLCIIGLMGGANAEIKLSSLLPKRLTV 259
Query: 281 SKKRLVP------LILMPKKEEMEWLVDMAKQGKLKTTIDSKYPLSRAQEAWAKSMEGHA 334
L P +++ + E+ W + GK+K I PLS+A E + +
Sbjct: 260 LGAALRPRSPENKAVVVREVEKNVW--PAIEAGKVKPVIYKYLPLSQAAEGHSLMESSNH 317
Query: 335 TGKIVVE 341
GKI++E
Sbjct: 318 IGKILLE 324
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,268,458
Number of extensions: 227125
Number of successful extensions: 568
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 8
Length of query: 346
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 247
Effective length of database: 8,392,385
Effective search space: 2072919095
Effective search space used: 2072919095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)