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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0359700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alcohol dehydrogenase superfamily, zinc-containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0159) R2 : 0.00118
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0246 (0.0335) R2dN8 : 0.00153 R2N8 : 0.00118
σ : 0.299
deviance : 41.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.66 0.296 2.88 -0.0879 0.0546 0.202 -0.0252 0.781 0.0379 4.78 0.4997 3149 -- --
39.88 0.294 2.89 -0.0864 0.0591 0.264 -0.00766 -- 0.0362 4.8 0.967 2456 -- --
39.66 0.293 2.88 -0.0874 0.0542 0.201 -- 0.775 0.0379 4.77 0.5 3133 -- --
39.88 0.294 2.89 -0.0879 0.0552 0.261 -- -- 0.0338 4.97 0.9942 2456 -- --
39.82 0.294 2.88 -0.0863 -- 0.196 -- 0.806 0.0388 -- 0.5 3133 -- --
40.94 0.3 2.9 -0.0163 0.06 -- 0.0422 -- 0.0217 5.04 -- -- -- --
40.94 0.3 2.9 -0.0164 0.0602 -- -- -- 0.0215 4.83 -- -- -- --
40.04 0.295 2.89 -0.0814 -- 0.261 -- -- 0.0361 -- 0.7816 2456 -- --
40.04 0.295 2.89 -- 0.0549 0.224 -- -- 0.0394 5.16 0.998 2457 -- --
41.13 0.3 2.9 -0.0142 -- -- -- -- 0.023 -- -- -- -- --
40.95 0.299 2.9 -- 0.0599 -- -- -- 0.0233 4.84 -- -- -- --
40.2 0.295 2.89 -- -- 0.229 -- -- 0.0425 -- 0.8847 2456 -- --
41.14 0.299 2.9 -- -- -- -- -- 0.0246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.71 humidity 80.0 30 < th dose independent rect. 1 5
5 34.71 humidity 80.0 30 < th dose dependent rect. 1 5
9 34.82 humidity 80.0 30 < th dose independent rect. 1 3
13 34.82 humidity 80.0 30 < th dose dependent rect. 1 3
15 34.83 humidity 80.0 30 < th dose independent rect. 1 1
21 34.83 humidity 80.0 30 < th dose dependent rect. 1 1
41 37.07 humidity 80.0 1440 > th dose independent rect. 24 2
45 37.34 humidity 80.0 720 < th dose independent rect. 1 1
49 37.34 humidity 80.0 720 < th dose dependent rect. 1 1
70 38.01 atmosphere 1005.0 30 > th dose dependent rect. 1 1
74 38.17 temperature 20.0 90 < th dose independent rect. 1 1
78 38.20 atmosphere 1000.0 10 < th dose independent rect. 7 1
86 38.20 atmosphere 1000.0 10 < th dose dependent rect. 7 1
121 38.44 radiation 1.0 1440 < th dose dependent rect. 7 1
127 38.56 precipitation 0.1 270 > th dose independent rect. 2 1
128 38.56 precipitation 0.1 270 > th dose dependent rect. 2 1
130 38.58 wind 1.0 30 < th dose independent rect. 6 1
138 38.73 radiation 1.0 1440 > th dose independent rect. 7 1
140 38.74 radiation 1.0 1440 < th dose independent rect. 7 1
141 38.76 wind 3.0 10 < th dose independent rect. 1 2
147 38.81 atmosphere 1005.0 90 > th dose independent rect. 1 1
160 38.87 temperature 25.0 90 > th dose dependent rect. 6 1
164 38.89 temperature 25.0 10 < th dose dependent rect. 2 1
168 38.91 atmosphere 1005.0 10 > th dose independent rect. 1 2
173 38.92 precipitation 0.1 1440 > th dose independent rect. 8 1
174 38.92 precipitation 0.1 1440 > th dose dependent rect. 8 1
186 38.99 wind 1.0 1440 < th dose dependent rect. 15 1
189 39.02 temperature 25.0 90 < th dose dependent rect. 1 1
197 39.05 temperature 25.0 90 > th dose independent rect. 6 1
200 39.06 temperature 20.0 720 < th dose independent rect. 1 1
240 39.17 temperature 25.0 270 > th dose independent rect. 4 2
245 39.20 temperature 30.0 720 < th dose dependent rect. 1 1
247 39.21 wind 3.0 90 < th dose independent rect. 1 1
249 39.21 temperature 20.0 90 < th dose independent rect. 24 5
252 39.22 precipitation 0.1 1440 < th dose independent rect. 7 1
254 39.22 radiation 40.0 10 < th dose independent rect. 3 22
255 39.22 precipitation 0.1 1440 < th dose dependent rect. 7 1
256 39.22 humidity 90.0 1440 > th dose dependent rect. 7 3
257 39.22 temperature 30.0 90 < th dose dependent rect. 24 13
271 39.24 temperature 30.0 10 < th dose dependent rect. 1 11
272 39.25 precipitation 0.1 270 > th dose independent rect. 8 1
281 39.25 precipitation 0.1 270 > th dose dependent rect. 8 1
285 39.26 wind 1.0 90 > th dose independent rect. 1 1
298 39.27 wind 1.0 1440 < th dose independent rect. 15 1
303 39.27 humidity 70.0 720 > th dose independent rect. 2 7
337 39.31 precipitation 0.1 1440 < th dose independent rect. 7 3
343 39.31 precipitation 0.1 1440 < th dose dependent rect. 7 3
346 39.31 temperature 20.0 720 > th dose dependent rect. 21 11
357 39.33 wind 7.0 30 < th dose independent rect. 3 22
359 39.33 radiation 1.0 43200 < th dose dependent rect. 2 2
367 39.34 humidity 80.0 1440 < th dose dependent rect. 21 1
391 39.37 precipitation 0.1 1440 < th dose independent rect. 7 5
394 39.37 precipitation 0.1 1440 < th dose dependent rect. 7 5
413 39.39 humidity 60.0 10 > th dose independent rect. 3 22
422 39.40 precipitation 0.1 10 < th dose independent rect. 1 2
429 39.40 precipitation 0.1 10 < th dose dependent rect. 1 2
430 39.40 radiation 1.0 1440 < th dose dependent rect. 3 6
433 39.40 radiation 1.0 1440 < th dose dependent rect. 21 12
444 39.41 humidity 90.0 14400 > th dose dependent rect. 7 1
455 39.41 radiation 1.0 1440 < th dose dependent rect. 23 10
470 39.42 wind 9.0 10 < th dose dependent rect. 1 2
479 39.43 wind 3.0 43200 < th dose independent rect. 19 2
483 39.43 precipitation 0.1 30 < th dose independent rect. 3 22
498 39.43 precipitation 0.1 30 < th dose dependent rect. 3 22
525 39.45 temperature 10.0 30 > th dose independent rect. 1 2
528 39.45 humidity 50.0 30 > th dose independent rect. 1 2
533 39.45 atmosphere 1010.0 30 < th dose independent rect. 1 2
535 39.45 radiation 1.0 30 < th dose independent rect. 1 2
541 39.45 radiation 1.0 1440 > th dose independent rect. 18 16
542 39.45 radiation 1.0 1440 < th dose independent rect. 18 16
544 39.45 temperature 10.0 30 > th dose independent rect. 3 22
546 39.45 wind 9.0 90 < th dose dependent rect. 1 1
547 39.45 radiation 1.0 30 < th dose dependent rect. 1 2
560 39.45 humidity 50.0 10 > th dose dependent rect. 21 14
566 39.46 wind 9.0 1440 < th dose independent rect. 2 2
569 39.46 temperature 10.0 1440 > th dose independent rect. 2 2
574 39.46 temperature 30.0 1440 < th dose independent rect. 2 2
581 39.46 humidity 50.0 1440 > th dose independent rect. 2 2
591 39.46 atmosphere 995.0 1440 > th dose independent rect. 2 2
599 39.46 radiation 1.0 1440 < th dose independent rect. 2 2
621 39.46 temperature 10.0 43200 > th dose independent rect. 9 11
627 39.46 temperature 10.0 1440 > th dose independent rect. 4 22
631 39.46 atmosphere 995.0 30 > th dose independent rect. 3 22
638 39.46 radiation 1.0 1440 < th dose dependent rect. 2 2
652 39.46 precipitation 0.1 4320 > th dose dependent rect. 4 2
654 39.46 precipitation 0.1 4320 > th dose dependent rect. 4 5
683 39.47 humidity 90.0 4320 > th dose independent rect. 18 2
685 39.47 radiation 40.0 4320 < th dose independent rect. 4 5
693 39.47 precipitation 0.1 4320 > th dose independent rect. 4 11
695 39.47 radiation 40.0 4320 < th dose independent rect. 15 18
721 39.48 humidity 90.0 14400 > th dose independent sin 16 NA
723 39.48 wind 3.0 43200 > th dose independent rect. 19 2
726 39.48 precipitation 0.1 4320 > th dose independent rect. 4 2
727 39.48 precipitation 0.1 4320 < th dose independent rect. 4 2
730 39.48 radiation 40.0 4320 < th dose independent rect. 6 3
732 39.48 humidity 90.0 14400 > th dose independent rect. 17 4
737 39.48 precipitation 0.1 4320 > th dose independent rect. 4 5
749 39.48 precipitation 0.1 4320 < th dose independent rect. 4 11
757 39.48 precipitation 0.1 4320 < th dose dependent rect. 4 2
765 39.48 precipitation 0.1 4320 < th dose dependent rect. 4 11
772 39.48 wind 9.0 30 < th dose dependent rect. 3 22
773 39.48 temperature 10.0 30 > th dose dependent rect. 3 22
797 39.49 radiation 40.0 4320 < th dose independent rect. 22 11
799 39.49 humidity 90.0 14400 > th dose independent rect. 16 13
800 39.49 radiation 1.0 1440 < th dose independent rect. 21 13
804 39.49 radiation 40.0 4320 < th dose independent rect. 18 15
807 39.49 humidity 90.0 14400 > th dose independent rect. 16 16
821 39.49 humidity 90.0 14400 > th dose independent rect. 7 22
825 39.49 humidity 90.0 14400 > th dose dependent rect. 17 8
897 39.50 humidity 90.0 14400 > th dose independent rect. 9 20
911 39.50 humidity 90.0 14400 > th dose independent rect. 2 23
917 39.50 temperature 25.0 10 > th dose dependent rect. 6 3
919 39.50 humidity 90.0 14400 > th dose dependent rect. 19 6
926 39.50 precipitation 0.1 4320 > th dose dependent rect. 3 13
983 39.51 humidity 90.0 14400 > th dose independent rect. 2 20