BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0192800 Os08g0192800|AK120613
(481 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0192800 Bromodomain containing protein 715 0.0
Os04g0623100 Bromodomain containing protein 377 e-104
Os04g0622700 Bromodomain containing protein 306 2e-83
Os02g0250300 Bromodomain containing protein 145 8e-35
Os04g0622000 Conserved hypothetical protein 137 1e-32
Os02g0601800 Bromodomain containing protein 105 6e-23
Os07g0507700 Bromodomain containing protein 92 9e-19
AK105395 92 1e-18
Os01g0648700 Bromodomain containing protein 78 2e-14
AK111203 77 2e-14
AK110437 75 9e-14
>Os08g0192800 Bromodomain containing protein
Length = 481
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/445 (82%), Positives = 365/445 (82%)
Query: 1 MTSAVLAGRNEVXXXXXXXWADARVPLMPKHATXXXXXXXXXXXXXXXXXXXXXXXXAAT 60
MTSAVLAGRNEV WADARVPLMPKHAT AAT
Sbjct: 1 MTSAVLAGRNEVHHHHHHHWADARVPLMPKHATNPNPRRHHRPSPSIPPPPPPQRPPAAT 60
Query: 61 VAPSVPDPSPSGHVTIRPSELSRREAQVLRARLTGELSRVRALLSDIDGWXXXXXXXXXX 120
VAPSVPDPSPSGHVTIRPSELSRREAQVLRARLTGELSRVRALLSDIDGW
Sbjct: 61 VAPSVPDPSPSGHVTIRPSELSRREAQVLRARLTGELSRVRALLSDIDGWEARRRRPAEP 120
Query: 121 XXQRGHVSPPPALQAAMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMD 180
QRGHVSPPPALQAAMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMD
Sbjct: 121 PRQRGHVSPPPALQAAMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMD 180
Query: 181 LGTVKENLAFGRYPSHEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYKEALS 240
LGTVKENLAFGRYPSHEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYKEALS
Sbjct: 181 LGTVKENLAFGRYPSHEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYKEALS 240
Query: 241 WFEQECQRLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPNKREMSDEEKH 300
WFEQECQRLE EPNKREMSDEEKH
Sbjct: 241 WFEQECQRLEPPMPLALPPPPQPPVPMPMQAPPRIGGGGRRPKPKAREPNKREMSDEEKH 300
Query: 301 KLRVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFVVNCKKA 360
KLRVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFVVNCKKA
Sbjct: 301 KLRVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFVVNCKKA 360
Query: 361 LSKSRRTVAMNGDAVDATAIVPTEDDTVQVNVHHQPSVVEIGDSENDTPEKRVSEVDMVD 420
LSKSRRTVAMNGDAVDATAIVPTEDDTVQVNVHHQPSVVEIGDSENDTPEKRVSEVDMVD
Sbjct: 361 LSKSRRTVAMNGDAVDATAIVPTEDDTVQVNVHHQPSVVEIGDSENDTPEKRVSEVDMVD 420
Query: 421 EYVDIGDEMPTANYQSVEIERDAQV 445
EYVDIGDEMPTANYQSVEIERDAQV
Sbjct: 421 EYVDIGDEMPTANYQSVEIERDAQV 445
>Os04g0623100 Bromodomain containing protein
Length = 456
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/450 (46%), Positives = 264/450 (58%), Gaps = 27/450 (6%)
Query: 1 MTSAVLAGRNEVXXXXXX-XWADARVPLMPKHATXXXXXXXXXXXXXXXXXXXXXXXXAA 59
M SA+LAGR V W + R PL P
Sbjct: 1 MASALLAGRGGVNHHHHHHQWGETRAPLAPVAPNSDPNHPLQQRANG------------- 47
Query: 60 TVAPSVPDPSPSGHVTIRPSELSRREAQVLRARLTGELSRVRALLSDIDGWXXXXXXXXX 119
S P PS +V +RP ++ REA+ LR RL GEL +VRAL++ ID W
Sbjct: 48 ----SATRPPPSSYVALRPGAMAHREARALRDRLAGELGQVRALIARIDTWQQGQVKRHG 103
Query: 120 XXXQRGHVSPPPALQAAMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPM 179
+R +PP L+AAMRKRC QIL +LRK K S+WFN+PV+V+RL LHDYHA+I+ PM
Sbjct: 104 SP-RRDLPTPPAKLRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPM 162
Query: 180 DLGTVKENLAFGRYPSHEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYKEAL 239
DLGTV+ NLA GRYPSH+ FA DVRLTFSNALRYNPA H VH +A +LLA+FE +YK ++
Sbjct: 163 DLGTVRANLAAGRYPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASM 222
Query: 240 SWFEQECQRLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPNKREMSDEEK 299
SWFEQE L+ EPNKR+M+ EEK
Sbjct: 223 SWFEQE---LKLLEPPMPVPPPELPPATAPVQVKPRAANVKMRKPKAREPNKRDMTLEEK 279
Query: 300 HKLRVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFVVNCKK 359
+ LRV + +LPEEKM NVLQIV+KRN +P L+G +ELD DEMDVET WELDRFV N KK
Sbjct: 280 NLLRVGLESLPEEKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNNFKK 339
Query: 360 ALSKSRRTVAMNGDAVDATAIVPTEDDTVQVNVHHQPSVVEIGDS----ENDTPEKRVSE 415
AL+KSRR +NG+ D D + VN ++V+ GD E+ P+K ++
Sbjct: 340 ALNKSRRAAIVNGENADVIDASVANDSDMLVN-GSTATMVDNGDVTMAIESKDPDKITTQ 398
Query: 416 VDMVDEYVDIGDEMPTANYQSVEIERDAQV 445
+ +DEYVDIGDEMPTA YQSVEIE+D +
Sbjct: 399 AEQLDEYVDIGDEMPTATYQSVEIEKDTEA 428
>Os04g0622700 Bromodomain containing protein
Length = 355
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/330 (50%), Positives = 206/330 (62%), Gaps = 26/330 (7%)
Query: 137 MRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGRYPSH 196
MRKRC QIL +LRK K S+WFN+PV+V+RL L DYHA+I+ PMDLGTV+ NLA GRYPSH
Sbjct: 1 MRKRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSH 60
Query: 197 EAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYKEALSWFEQECQRLEXXXXXX 256
+ FA D+RLTFSNALRYNPA H VH +A +LLA+FE +YK ++SWFEQE L+
Sbjct: 61 DDFAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQE---LKILEPPM 117
Query: 257 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPNKREMSDEEKHKLRVEIGNLPEEKMGN 316
EPNKREM+ EEK+ LRV + +LPEEKM N
Sbjct: 118 PVPPPELPPAKAPAQVKPRAGNVKMRKTKAREPNKREMTLEEKNLLRVGLESLPEEKMHN 177
Query: 317 VLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFVVNCKKALSKSRRTVAMNGDAVD 376
VLQIV+KRN +P L+G +ELD DEMDVET WELDRFV KKAL+KSRR +NG+ D
Sbjct: 178 VLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNKFKKALNKSRRAAIVNGENAD 237
Query: 377 ATAIVPTEDDTVQVNVHHQPSVVEIGDS----ENDTPEKRVSEVDMVDEY---------- 422
D + VN ++V+ GD E+ P+K ++ + +DEY
Sbjct: 238 VIDASVANDSDMLVN-GSTATMVDNGDVTMAIESKDPDKITTQAEQLDEYVDAVADPEFL 296
Query: 423 --------VDIGDEMPTANYQSVEIERDAQ 444
VD+GDEMPTA YQSVEIE+D +
Sbjct: 297 SWPWVRPCVDVGDEMPTATYQSVEIEKDTE 326
>Os02g0250300 Bromodomain containing protein
Length = 600
Score = 145 bits (365), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 119/244 (48%), Gaps = 16/244 (6%)
Query: 139 KRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGRYPSHEA 198
K+ +L+RL K K FN PVD L LHDY AII++PMDLGT+K L G+Y +
Sbjct: 317 KKSMSLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPRE 376
Query: 199 FATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYK--EALSWFEQECQR-------- 248
FA DVRLTF NA+ YNP VH A LL FE + EA + C
Sbjct: 377 FADDVRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPEIEAEVQYLASCPPLPNKFPPP 436
Query: 249 ------LEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPNKREMSDEEKHKL 302
L+ +P+KR+M+ +EK KL
Sbjct: 437 PIDVRFLDRSDSVKHHMVLDSKSRPLSHTPTYSARTPSMKKPKAKDPDKRDMTIDEKRKL 496
Query: 303 RVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFVVNCKKALS 362
+ NLP EK+ V+QI++ +N + +E++ D MD ETLWELDRFV N KK LS
Sbjct: 497 SNNLQNLPPEKLDVVVQIIKNKNLSVRQHDDEIEVEIDSMDTETLWELDRFVANYKKNLS 556
Query: 363 KSRR 366
K +R
Sbjct: 557 KQKR 560
>Os04g0622000 Conserved hypothetical protein
Length = 338
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 103/155 (66%), Gaps = 6/155 (3%)
Query: 291 KREMSDEEKHKLRVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWEL 350
K E++ EEK+ LRV + +LPE+KM NVLQIV+KRN +P L+G +ELD DEMDVET WEL
Sbjct: 156 KWEITLEEKNLLRVGLESLPEKKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWEL 215
Query: 351 DRFVVNCKKALSKSRRTVAMNGDAVDATAIVPTEDDTVQVNVHHQPSVVEIGDS----EN 406
DRFV N KKAL+KSRR +NG+ D D V VN ++V+ GD E+
Sbjct: 216 DRFVNNFKKALNKSRRAAIVNGENADVIDASVANDSYVLVN-GSTATMVDNGDVAMAIES 274
Query: 407 DTPEKRVSEVDMVDEYVDIGDEMPTANYQSVEIER 441
P+K ++ + +DEYVDIGDEMPTA S+ I R
Sbjct: 275 KDPDKITTQAEQLDEYVDIGDEMPTATL-SLNIHR 308
>Os02g0601800 Bromodomain containing protein
Length = 714
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 63/101 (62%)
Query: 136 AMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGRYPS 195
A+ K+C IL +L QK S F+SPVD +L + DY II+ PMDLGT++ L G Y S
Sbjct: 166 AIFKQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTS 225
Query: 196 HEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYK 236
FA DVRLTFSNA+ YNP H VH YA L FE ++
Sbjct: 226 PSEFAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESRWR 266
>Os07g0507700 Bromodomain containing protein
Length = 484
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%)
Query: 133 LQAAMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGR 192
+ + ++C IL +L K FN+PVD + DY +IRNPMDLGTVK L +
Sbjct: 57 MNTSKSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQ 116
Query: 193 YPSHEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYK 236
Y + FA DVRLTFSNA++YNP + VH A L F+ +K
Sbjct: 117 YSNPYEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWK 160
>AK105395
Length = 378
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%)
Query: 133 LQAAMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGR 192
+ + ++C IL +L K FN+PVD + DY +IRNPMDLGTVK L +
Sbjct: 1 MNTSKSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQ 60
Query: 193 YPSHEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYK 236
Y + FA DVRLTFSNA++YNP + VH A L F+ +K
Sbjct: 61 YSNPYEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWK 104
>Os01g0648700 Bromodomain containing protein
Length = 238
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%)
Query: 140 RCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGRYPSHEAF 199
RC ++L +L + + F PVD L+L DY+ I +PMDLGTV+ L RY AF
Sbjct: 55 RCGKLLDKLLEHEDGWVFAEPVDARALRLVDYYLRISDPMDLGTVRRRLERRRYADPWAF 114
Query: 200 ATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYKEALS 240
A DVRLTF+NA+ YN A V+ A+ L FE + L+
Sbjct: 115 AADVRLTFNNAMSYNSAGDPVYESAAELSEIFEAGWPSVLA 155
>AK111203
Length = 823
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 127 VSPPPALQ---------AAMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRN 177
++PPP + +A ++C QI T L K +S FN PVD L + DY II+
Sbjct: 185 LTPPPGRKRRTGQYLPLSAPLQQCAQIATALMKHPMSPPFNIPVDPLALGIPDYWTIIKE 244
Query: 178 PMDLGTVKENLAFGRYPSHEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLY 235
PMDLGT+K + G Y FA DVRL + NAL YN + A L FE +
Sbjct: 245 PMDLGTIKSWVDGGAYKDIHEFADDVRLVWRNALTYNAPGSQISVMAQTLADFFEQKF 302
>AK110437
Length = 434
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 150 KQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGRYPSHEAFATDVRLTFSN 209
K K + FN PVD L L Y +I+ PMDLGTVK+ LA Y + EAF DV+L + N
Sbjct: 2 KHKWAFPFNQPVDYVALNLPTYPQVIKQPMDLGTVKQRLADNYYETVEAFDADVQLVWHN 61
Query: 210 ALRYNPADHHVHRYASNLLATF-EGLYK 236
A+ +N A H VH A L F EGL K
Sbjct: 62 AMTFNAAGHDVHIMAKTLKGEFDEGLKK 89
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,652,873
Number of extensions: 458654
Number of successful extensions: 1292
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1285
Number of HSP's successfully gapped: 14
Length of query: 481
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 376
Effective length of database: 11,553,331
Effective search space: 4344052456
Effective search space used: 4344052456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)