BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0157600 Os08g0157600|AK111893
(719 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0157600 Homeodomain-like containing protein 1269 0.0
Os06g0728700 Homeodomain-like containing protein 128 1e-29
Os02g0685200 Homeodomain-like containing protein 122 7e-28
Os04g0583900 Similar to LHY protein 120 5e-27
Os01g0156000 Similar to Myb family DNA-binding protein 111 2e-24
Os06g0105800 Homeodomain-like containing protein 100 5e-21
Os05g0162800 Homeodomain-like containing protein 78 3e-14
>Os08g0157600 Homeodomain-like containing protein
Length = 719
Score = 1269 bits (3285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/719 (88%), Positives = 637/719 (88%)
Query: 1 MEINSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQ 60
MEINSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQ
Sbjct: 1 MEINSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQ 60
Query: 61 IRSHAQKFFTKLEKEAINNGTSPGQAHDIDIXXXXXXXXXXXXXXXXSCLSSETSTREVQ 120
IRSHAQKFFTKLEKEAINNGTSPGQAHDIDI SCLSSETSTREVQ
Sbjct: 61 IRSHAQKFFTKLEKEAINNGTSPGQAHDIDIPPPRPKRKPNSPYPRKSCLSSETSTREVQ 120
Query: 121 NDKATISNMTNNSTAQMAGDAALEKLQRKEISEKGSCSEVLNLFREVPXXXXXXXXXXXX 180
NDKATISNMTNNSTAQMAGDAALEKLQRKEISEKGSCSEVLNLFREVP
Sbjct: 121 NDKATISNMTNNSTAQMAGDAALEKLQRKEISEKGSCSEVLNLFREVPSASFSSVNKSSS 180
Query: 181 XXXXXRGLEPTKTEVKDVVILERDSISNGAGKDAKDINDQEMERLNGIHISSKPDHSHEN 240
RGLEPTKTEVKDVVILERDSISNGAGKDAKDINDQEMERLNGIHISSKPDHSHEN
Sbjct: 181 NHGASRGLEPTKTEVKDVVILERDSISNGAGKDAKDINDQEMERLNGIHISSKPDHSHEN 240
Query: 241 CLDTSSQQFKPKSNSVETTYVDWSAAKASHYQMDRNGVTGFQATGTEGSHPDQTSDQMGG 300
CLDTSSQQFKPKSNSVETTYVDWSAAKASHYQMDRNGVTGFQATGTEGSHPDQTSDQMGG
Sbjct: 241 CLDTSSQQFKPKSNSVETTYVDWSAAKASHYQMDRNGVTGFQATGTEGSHPDQTSDQMGG 300
Query: 301 ASGTMNQCIHPTLPVDPKFDGNAAAQPFPHNYAAFAPMMQCHCNQDAYRSFANMSSTFSS 360
ASGTMNQCIHPTLPVDPKFDGNAAAQPFPHNYAAFAPMMQCHCNQDAYRSFANMSSTFSS
Sbjct: 301 ASGTMNQCIHPTLPVDPKFDGNAAAQPFPHNYAAFAPMMQCHCNQDAYRSFANMSSTFSS 360
Query: 361 MLVSTLLSNPAIHAAARLAASYWPTVDGNTPDPNQENLSESAQGSHAGSPPNMXXXXXXX 420
MLVSTLLSNPAIHAAARLAASYWPTVDGNTPDPNQENLSESAQGSHAGSPPNM
Sbjct: 361 MLVSTLLSNPAIHAAARLAASYWPTVDGNTPDPNQENLSESAQGSHAGSPPNMASIVTAT 420
Query: 421 XXXXXXXXXTQGXXXXXXXXXXXXXXXXXXXXXSTADVQRAQEKDIDCPMDNAQKELQET 480
TQG STADVQRAQEKDIDCPMDNAQKELQET
Sbjct: 421 VAAASAWWATQGLLPLFPPPIAFPFVPAPSAPFSTADVQRAQEKDIDCPMDNAQKELQET 480
Query: 481 RKQDNFEAMKVIVSSETDESGKGEVSLHTELKISPADKADTKPAAGAETSDVFGNKKKQD 540
RKQDNFEAMKVIVSSETDESGKGEVSLHTELKISPADKADTKPAAGAETSDVFGNKKKQD
Sbjct: 481 RKQDNFEAMKVIVSSETDESGKGEVSLHTELKISPADKADTKPAAGAETSDVFGNKKKQD 540
Query: 541 RSSCGSNTPSSSDIEADNAPENQEKANDKAKQASCSNSSAGDNNHRRFRSSASTSDSWKE 600
RSSCGSNTPSSSDIEADNAPENQEKANDKAKQASCSNSSAGDNNHRRFRSSASTSDSWKE
Sbjct: 541 RSSCGSNTPSSSDIEADNAPENQEKANDKAKQASCSNSSAGDNNHRRFRSSASTSDSWKE 600
Query: 601 VSEEGRLAFDALFSRERLPQSFSPPQVEGSKEISKXXXXXXXXXXXXLNKNAAIIDQELD 660
VSEEGRLAFDALFSRERLPQSFSPPQVEGSKEISK LNKNAAIIDQELD
Sbjct: 601 VSEEGRLAFDALFSRERLPQSFSPPQVEGSKEISKEEEDEVTTVTVDLNKNAAIIDQELD 660
Query: 661 TADEPRASFPNELSNLKLKSRRTGFKPYKRCSVEAKENRVPASDEVGTKRIRLESEAST 719
TADEPRASFPNELSNLKLKSRRTGFKPYKRCSVEAKENRVPASDEVGTKRIRLESEAST
Sbjct: 661 TADEPRASFPNELSNLKLKSRRTGFKPYKRCSVEAKENRVPASDEVGTKRIRLESEAST 719
>Os06g0728700 Homeodomain-like containing protein
Length = 451
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 73/91 (80%), Gaps = 7/91 (7%)
Query: 1 MEINSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQ 60
M+ N EE VKVRKPYTITKQRE+WTE EH++FLEALKLYGR+W++I+EH+GTKTAVQ
Sbjct: 42 MQPNEGMEEFPVKVRKPYTITKQREKWTEEEHDKFLEALKLYGRSWRQIQEHIGTKTAVQ 101
Query: 61 IRSHAQKFFTKLEKEAINNGTSPGQAHDIDI 91
IRSHAQKFF+K+ +E PG + I+I
Sbjct: 102 IRSHAQKFFSKVVRE-------PGSNNAIEI 125
>Os02g0685200 Homeodomain-like containing protein
Length = 491
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 66/74 (89%)
Query: 2 EINSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQI 61
+++ SGEE V K RKPYTITKQRE+WT+ EH FLEAL+L+GRAW+RI+EH+GTKTAVQI
Sbjct: 39 DMDLSGEEHVPKARKPYTITKQREKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQI 98
Query: 62 RSHAQKFFTKLEKE 75
RSHAQKFF+K+ +E
Sbjct: 99 RSHAQKFFSKVVRE 112
>Os04g0583900 Similar to LHY protein
Length = 463
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 73/95 (76%), Gaps = 6/95 (6%)
Query: 3 INSSG-----EEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKT 57
++SSG E + K RKPYTITKQRE+WTE EH FLEAL+L+GRAW+RI+EH+GTKT
Sbjct: 33 LDSSGMDMMDEARIPKARKPYTITKQREKWTEDEHKLFLEALQLHGRAWRRIQEHIGTKT 92
Query: 58 AVQIRSHAQKFFTKLEKEAI-NNGTSPGQAHDIDI 91
AVQIRSHAQKFF+K+ KE+ +N S G A I I
Sbjct: 93 AVQIRSHAQKFFSKVIKESSGDNCNSLGAASSIQI 127
>Os01g0156000 Similar to Myb family DNA-binding protein
Length = 306
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 57/71 (80%)
Query: 13 KVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKL 72
K RKPYTITK RERW+E EH RFL+AL +YGR W++IEEHVGTKT +QIRSHAQK+F K+
Sbjct: 21 KARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEHVGTKTTIQIRSHAQKYFLKV 80
Query: 73 EKEAINNGTSP 83
+K + G P
Sbjct: 81 QKMGLAAGLPP 91
>Os06g0105800 Homeodomain-like containing protein
Length = 298
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 57/69 (82%), Gaps = 4/69 (5%)
Query: 13 KVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKL 72
+VRKPYTITK RE WT+ EH++FLEAL+L+ R W++IE +VG+KT +QIRSHAQK+F K+
Sbjct: 29 RVRKPYTITKSRESWTDPEHDKFLEALQLFDRDWKKIEAYVGSKTVIQIRSHAQKYFLKV 88
Query: 73 EKEAINNGT 81
+K NGT
Sbjct: 89 QK----NGT 93
>Os05g0162800 Homeodomain-like containing protein
Length = 300
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%)
Query: 13 KVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQI 61
K RKPYTIT+ RERW+ EH RFL+AL L+GR W+RIE V TKTA+Q+
Sbjct: 4 KARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.307 0.122 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,438,169
Number of extensions: 822179
Number of successful extensions: 2513
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2520
Number of HSP's successfully gapped: 7
Length of query: 719
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 611
Effective length of database: 11,396,689
Effective search space: 6963376979
Effective search space used: 6963376979
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 160 (66.2 bits)