Os01g0156000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Myb family DNA-binding protein.
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Os01g0156000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Myb family DNA-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 247.83 | 0.74 | 2.55 | 2.07 | 0.258 | -25.5 | 0.361 | 156 | -0.132 | 4.22 | 994.9 | 795 | -- | -- |
| 252.6 | 0.746 | 2.93 | -0.166 | 0.279 | -0.0833 | 0.492 | -- | -0.142 | 3.95 | 994.9 | 795 | -- | -- |
| 247.99 | 0.733 | 2.55 | 2.1 | 0.269 | -25.6 | -- | 157 | -0.134 | 4.94 | 994.9 | 809 | -- | -- |
| 250.64 | 0.737 | 2.93 | -0.196 | 0.279 | 0.712 | -- | -- | -0.13 | 4.5 | 995.7 | 879 | -- | -- |
| 251.76 | 0.739 | 2.54 | 2.17 | -- | -25.9 | -- | 159 | -0.13 | -- | 995 | 814 | -- | -- |
| 252.62 | 0.745 | 2.93 | -0.167 | 0.28 | -- | 0.495 | -- | -0.141 | 3.96 | -- | -- | -- | -- |
| 253.1 | 0.745 | 2.93 | -0.173 | 0.295 | -- | -- | -- | -0.144 | 4.77 | -- | -- | -- | -- |
| 254.9 | 0.744 | 2.93 | -0.19 | -- | 0.745 | -- | -- | -0.125 | -- | 995.7 | 886 | -- | -- |
| 251.61 | 0.739 | 2.92 | -- | 0.285 | 0.635 | -- | -- | -0.113 | 4.94 | 995.7 | 856 | -- | -- |
| 257.72 | 0.75 | 2.94 | -0.162 | -- | -- | -- | -- | -0.136 | -- | -- | -- | -- | -- |
| 253.89 | 0.745 | 2.93 | -- | 0.292 | -- | -- | -- | -0.125 | 4.78 | -- | -- | -- | -- |
| 255.84 | 0.745 | 2.93 | -- | -- | 0.707 | -- | -- | -0.105 | -- | 995.7 | 886 | -- | -- |
| 258.4 | 0.75 | 2.93 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 231.42 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 2 | 1 |
| 2 | 231.42 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 3 | 233.65 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 4 | 3 |
| 5 | 233.68 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 16 | 235.01 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 20 | 237.79 | temperature | 20.0 | 10 | > th | dose independent | rect. | 2 | 2 |
| 22 | 238.05 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 25 | 238.30 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 39 | 238.34 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 18 | 16 |
| 41 | 238.38 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 59 | 238.40 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 77 | 238.52 | wind | 3.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 148 | 239.09 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 149 | 239.11 | wind | 3.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 150 | 239.17 | temperature | 30.0 | 90 | > th | dose independent | rect. | 18 | 16 |
| 181 | 239.54 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 204 | 240.32 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 4 | 6 |
| 207 | 240.42 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 4 | 7 |
| 267 | 240.90 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 268 | 240.91 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 3 |
| 273 | 240.99 | wind | 1.0 | 270 | < th | dose independent | rect. | 24 | 3 |
| 311 | 241.27 | wind | 1.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 312 | 241.30 | radiation | 40.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 332 | 241.33 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 358 | 241.53 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 2 |
| 359 | 241.53 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 362 | 241.66 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 372 | 241.81 | radiation | 40.0 | 720 | < th | dose independent | rect. | 16 | 17 |
| 398 | 241.96 | wind | 1.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 402 | 241.98 | radiation | 10.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 403 | 242.02 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 404 | 242.06 | wind | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 408 | 242.15 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 411 | 242.15 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 427 | 242.29 | radiation | 30.0 | 10 | < th | dose independent | sin | 10 | NA |
| 431 | 242.32 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 9 | 1 |
| 436 | 242.34 | radiation | 20.0 | 10 | < th | dose independent | rect. | 21 | 15 |
| 442 | 242.40 | radiation | 40.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 462 | 242.46 | radiation | 30.0 | 720 | < th | dose independent | rect. | 23 | 9 |
| 515 | 242.63 | radiation | 20.0 | 10 | < th | dose independent | rect. | 23 | 13 |
| 517 | 242.64 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 518 | 242.64 | temperature | 20.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 519 | 242.65 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 567 | 242.76 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 568 | 242.76 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 5 |
| 583 | 242.82 | wind | 1.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 596 | 242.91 | wind | 1.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 600 | 242.93 | wind | 1.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 628 | 243.02 | wind | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 643 | 243.11 | wind | 1.0 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 644 | 243.11 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 648 | 243.13 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 2 |
| 669 | 243.16 | temperature | 10.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 672 | 243.20 | wind | 1.0 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 673 | 243.20 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 6 |
| 677 | 243.23 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 689 | 243.29 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 712 | 243.31 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 725 | 243.35 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 752 | 243.39 | wind | 1.0 | 1440 | > th | dose independent | rect. | 8 | 12 |
| 753 | 243.40 | radiation | 10.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 768 | 243.44 | wind | 1.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 859 | 243.55 | wind | 1.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 880 | 243.62 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 888 | 243.65 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 8 |
| 893 | 243.66 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 8 |
| 901 | 243.69 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 905 | 243.70 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 6 |
| 938 | 243.75 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 939 | 243.76 | wind | 1.0 | 720 | < th | dose independent | rect. | 9 | 1 |
| 963 | 243.78 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 967 | 243.80 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 985 | 243.85 | wind | 9.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 986 | 243.85 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 989 | 243.85 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 993 | 243.85 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 23 | 1 |