BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0156000 Os01g0156000|AK106969
(306 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0156000 Similar to Myb family DNA-binding protein 546 e-155
Os06g0105800 Homeodomain-like containing protein 142 3e-34
Os05g0162800 Homeodomain-like containing protein 110 9e-25
Os08g0157600 Homeodomain-like containing protein 110 1e-24
Os06g0728700 Homeodomain-like containing protein 103 2e-22
Os04g0583900 Similar to LHY protein 100 2e-21
Os02g0685200 Homeodomain-like containing protein 100 3e-21
>Os01g0156000 Similar to Myb family DNA-binding protein
Length = 306
Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust.
Identities = 267/306 (87%), Positives = 267/306 (87%)
Query: 1 MDRNTXXXXXXXXXXEMPGKKARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEH 60
MDRNT EMPGKKARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEH
Sbjct: 1 MDRNTNNNSNSSSSSEMPGKKARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEH 60
Query: 61 VGTKTTIQIRSHAQKYFLKVQKMGLAAGLPPQYPRRRLVMXXXXXXXXXXXXXXXXXTAI 120
VGTKTTIQIRSHAQKYFLKVQKMGLAAGLPPQYPRRRLVM TAI
Sbjct: 61 VGTKTTIQIRSHAQKYFLKVQKMGLAAGLPPQYPRRRLVMQQQQQQSSPAVSSSVAATAI 120
Query: 121 LHGQPQCLPPHHNVAVQSSIGWECPGVLPPATNDMQNLEWASTSGTAAWGNHHGLIEPPA 180
LHGQPQCLPPHHNVAVQSSIGWECPGVLPPATNDMQNLEWASTSGTAAWGNHHGLIEPPA
Sbjct: 121 LHGQPQCLPPHHNVAVQSSIGWECPGVLPPATNDMQNLEWASTSGTAAWGNHHGLIEPPA 180
Query: 181 AFVSFPGESSFMGAASFSNTSMDWTGTTSEMATASIVQDETIELPLSPDDLQFAQVYRFI 240
AFVSFPGESSFMGAASFSNTSMDWTGTTSEMATASIVQDETIELPLSPDDLQFAQVYRFI
Sbjct: 181 AFVSFPGESSFMGAASFSNTSMDWTGTTSEMATASIVQDETIELPLSPDDLQFAQVYRFI 240
Query: 241 GDIFDPDSPCPVETHLQKLKSMDDIIVKTIXXXXXXXXXXXXSPQFEPIRRLLSTYDPNR 300
GDIFDPDSPCPVETHLQKLKSMDDIIVKTI SPQFEPIRRLLSTYDPNR
Sbjct: 241 GDIFDPDSPCPVETHLQKLKSMDDIIVKTILLVLRNLEDNLLSPQFEPIRRLLSTYDPNR 300
Query: 301 GLSGHL 306
GLSGHL
Sbjct: 301 GLSGHL 306
>Os06g0105800 Homeodomain-like containing protein
Length = 298
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 137/278 (49%), Gaps = 36/278 (12%)
Query: 19 GKKARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEHVGTKTTIQIRSHAQKYFL 78
G++ RKPYTITK RE W++ EH++FL+AL ++ RDWKKIE +VG+KT IQIRSHAQKYFL
Sbjct: 27 GRRVRKPYTITKSRESWTDPEHDKFLEALQLFDRDWKKIEAYVGSKTVIQIRSHAQKYFL 86
Query: 79 KVQKMGLAAGLPPQYPRRRLVMXXXXXXXXXXXXXXXXXTAILHGQPQCLPPHHNVAVQS 138
KVQK G LPP P+R+ A + CL P
Sbjct: 87 KVQKNGTGEHLPPPRPKRKAAHPYPHKASKRAPQVVLPQQASHLMEQGCLIPM------- 139
Query: 139 SIGWECPGVLPPATNDMQNLEWASTSGTAAWGNHHGLIEPPAAFVSFPGESSFMGAASFS 198
+ P A N N ++S W + A SF + A + S
Sbjct: 140 -------DISPVARNFNANDVFSS------WDS--------ALAQSFSPRHTHGAANNCS 178
Query: 199 NTSMDWTGTTSEMATASIVQDETIELPLSPDDLQFAQVYRFIGDIFDPDSPCPVETHLQK 258
++ +GT T+ ++ E I LP FAQVY F+G IFDP++ HLQ+
Sbjct: 179 SSVESQSGTC---PTSEAIEQE-IMLPTLRAMPDFAQVYNFLGSIFDPET----SGHLQR 230
Query: 259 LKSMDDIIVKTIXXXXXXXXXXXXSPQFEPIRRLLSTY 296
L+ MD I V+T+ +P FE R++L+++
Sbjct: 231 LREMDPIDVETVLLLMKNLSINLTNPNFEAHRKVLASH 268
>Os05g0162800 Homeodomain-like containing protein
Length = 300
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 70/129 (54%), Gaps = 48/129 (37%)
Query: 20 KKARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEHVGTKTT------------- 66
KKARKPYTIT+PRERWS EEHERFLDALI++GRDWK+IE V TKT
Sbjct: 3 KKARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQVGHRLIDLSLC 62
Query: 67 ----------------------------------IQIRSHAQKYFLKVQKMGLAAGL-PP 91
IQIRSHAQK+FLK +K GLA GL PP
Sbjct: 63 KIINGGFRIQDRVRFLDFFFHFCLQALIDLPWSIIQIRSHAQKHFLKARKFGLAGGLPPP 122
Query: 92 QYPRRRLVM 100
+PRR ++
Sbjct: 123 LHPRRATLL 131
>Os08g0157600 Homeodomain-like containing protein
Length = 719
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 57/71 (80%)
Query: 21 KARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEHVGTKTTIQIRSHAQKYFLKV 80
K RKPYTITK RERW+E EH RFL+AL +YGR W++IEEHVGTKT +QIRSHAQK+F K+
Sbjct: 13 KVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKL 72
Query: 81 QKMGLAAGLPP 91
+K + G P
Sbjct: 73 EKEAINNGTSP 83
>Os06g0728700 Homeodomain-like containing protein
Length = 451
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 54/60 (90%)
Query: 21 KARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEHVGTKTTIQIRSHAQKYFLKV 80
K RKPYTITK RE+W+EEEH++FL+AL +YGR W++I+EH+GTKT +QIRSHAQK+F KV
Sbjct: 54 KVRKPYTITKQREKWTEEEHDKFLEALKLYGRSWRQIQEHIGTKTAVQIRSHAQKFFSKV 113
>Os04g0583900 Similar to LHY protein
Length = 463
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 55/62 (88%)
Query: 21 KARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEHVGTKTTIQIRSHAQKYFLKV 80
KARKPYTITK RE+W+E+EH+ FL+AL ++GR W++I+EH+GTKT +QIRSHAQK+F KV
Sbjct: 48 KARKPYTITKQREKWTEDEHKLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKV 107
Query: 81 QK 82
K
Sbjct: 108 IK 109
>Os02g0685200 Homeodomain-like containing protein
Length = 491
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 53/60 (88%)
Query: 21 KARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEHVGTKTTIQIRSHAQKYFLKV 80
KARKPYTITK RE+W++EEH FL+AL ++GR W++I+EH+GTKT +QIRSHAQK+F KV
Sbjct: 50 KARKPYTITKQREKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKV 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,168,703
Number of extensions: 383548
Number of successful extensions: 1025
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1038
Number of HSP's successfully gapped: 7
Length of query: 306
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 205
Effective length of database: 11,762,187
Effective search space: 2411248335
Effective search space used: 2411248335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)