Os02g0685200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os02g0685200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 280.06 | 0.786 | 11.1 | 0.0515 | 10.8 | 4.34 | 1.37 | -0.327 | -0.319 | 3.76 | 25.37 | 231 | 14.4 | -- |
| 279.69 | 0.779 | 11 | 0.0078 | 10.9 | 4.49 | 1.27 | -- | -0.233 | 3.81 | 26.44 | 230 | 14.2 | -- |
| 280.39 | 0.78 | 11 | 0.184 | 10.9 | 4.34 | -- | -1.56 | -0.168 | 3.79 | 26.87 | 241 | 14.4 | -- |
| 283.84 | 0.785 | 11 | 0.0139 | 10.9 | 4.41 | -- | -- | -0.263 | 3.76 | 26.6 | 241 | 14.5 | -- |
| 588.75 | 1.14 | 11.1 | -0.254 | -- | 13.1 | -- | 2.62 | -0.143 | -- | 42.79 | 36 | 2.46 | -- |
| 504.16 | 1.05 | 11.2 | -0.914 | 10.7 | -- | 1.94 | -- | -0.955 | 3.61 | -- | -- | -- | -- |
| 515.57 | 1.06 | 11.2 | -0.946 | 10.7 | -- | -- | -- | -0.966 | 3.6 | -- | -- | -- | -- |
| 467.05 | 1.01 | 11.2 | -0.619 | -- | 11.9 | -- | -- | -0.61 | -- | 71.8 | 2 | 2.32 | -- |
| 283.84 | 0.785 | 11 | -- | 10.9 | 4.38 | -- | -- | -0.263 | 3.75 | 26.6 | 248 | 14.6 | -- |
| 6864.41 | 3.87 | 11.2 | -0.498 | -- | -- | -- | -- | -0.682 | -- | -- | -- | -- | -- |
| 539.15 | 1.09 | 11.2 | -- | 10.7 | -- | -- | -- | -0.86 | 3.6 | -- | -- | -- | -- |
| 476.86 | 1.02 | 11.2 | -- | -- | 12 | -- | -- | -0.523 | -- | 69.08 | 2 | 2.31 | -- |
| 6870.96 | 3.87 | 11.2 | -- | -- | -- | -- | -- | -0.626 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 281.99 | temperature | 25 | 270 | < th | dose dependent | sin | 21 | NA |
| 2 | 283.03 | temperature | 25 | 90 | < th | dose dependent | sin | 19 | NA |
| 3 | 283.75 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 13 |
| 37 | 307.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 5 |
| 45 | 309.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 16 |
| 47 | 309.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 14 |
| 51 | 310.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 55 | 311.30 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 9 |
| 61 | 311.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 75 | 313.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 87 | 314.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 148 | 320.62 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 194 | 324.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 290 | 331.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 7 |
| 310 | 332.52 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 353 | 334.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 354 | 335.01 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 439 | 338.64 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 451 | 339.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 8 |
| 473 | 340.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 482 | 340.53 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |
| 492 | 340.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 507 | 341.37 | temperature | 20 | 270 | > th | dose independent | sin | 21 | NA |
| 524 | 341.70 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 13 |
| 541 | 342.32 | temperature | 20 | 1440 | < th | dose dependent | sin | 9 | NA |
| 552 | 342.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 585 | 343.85 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 608 | 344.53 | temperature | 10 | 270 | > th | dose dependent | sin | 20 | NA |
| 610 | 344.57 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 615 | 344.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 645 | 345.45 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 659 | 346.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 677 | 346.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 684 | 346.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 701 | 346.98 | temperature | 25 | 270 | < th | dose independent | sin | 20 | NA |
| 828 | 349.74 | temperature | 10 | 10 | > th | dose dependent | sin | 17 | NA |
| 891 | 351.01 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 893 | 351.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 894 | 351.06 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 15 |
| 951 | 352.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 955 | 352.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 963 | 352.43 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 3 |