BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0685200 Os02g0685200|AK111726
(491 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0685200 Homeodomain-like containing protein 753 0.0
Os04g0583900 Similar to LHY protein 289 3e-78
Os06g0728700 Homeodomain-like containing protein 132 4e-31
Os08g0157600 Homeodomain-like containing protein 122 8e-28
Os01g0156000 Similar to Myb family DNA-binding protein 99 7e-21
Os06g0105800 Homeodomain-like containing protein 92 9e-19
Os05g0162800 Homeodomain-like containing protein 72 7e-13
>Os02g0685200 Homeodomain-like containing protein
Length = 491
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/491 (77%), Positives = 379/491 (77%)
Query: 1 MEMACLPGNAMATDENGADDRAGGESTVDHLRSHMNYGDMDLSGEEHVPKARKPYTITKQ 60
MEMACLPGNAMATDENGADDRAGGESTVDHLRSHMNYGDMDLSGEEHVPKARKPYTITKQ
Sbjct: 1 MEMACLPGNAMATDENGADDRAGGESTVDHLRSHMNYGDMDLSGEEHVPKARKPYTITKQ 60
Query: 61 REKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKVVREXXXXXXXX 120
REKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKVVRE
Sbjct: 61 REKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKVVRESSGSNTGS 120
Query: 121 XXXXXXXXXXXIQIXXXXXXXXXXXXXXXXVDGAAKKHVPALRQLEKPPLWMQSLSEQEE 180
IQI VDGAAKKHVPALRQLEKPPLWMQSLSEQEE
Sbjct: 121 GGASAAAAAAAIQIPPPRPKRKPAHPYPRKVDGAAKKHVPALRQLEKPPLWMQSLSEQEE 180
Query: 181 GSPTSVLTAAQIGTEXXXXXXXXXXXXXXXXXXXXXXTDEHVDGGGSPASSVDREDGCLS 240
GSPTSVLTAAQIGTE TDEHVDGGGSPASSVDREDGCLS
Sbjct: 181 GSPTSVLTAAQIGTEALGGGFSNNSSGSGSLAPSAAGTDEHVDGGGSPASSVDREDGCLS 240
Query: 241 PSIPTAELAMQAPNTKMSIATTDAKEASSEASVFRLFGKSVVVKDSDQLHLLNGSNIATS 300
PSIPTAELAMQAPNTKMSIATTDAKEASSEASVFRLFGKSVVVKDSDQLHLLNGSNIATS
Sbjct: 241 PSIPTAELAMQAPNTKMSIATTDAKEASSEASVFRLFGKSVVVKDSDQLHLLNGSNIATS 300
Query: 301 GSVERATRNILVPSFAAAPEGSSSNPWPSSMQQFLYFLPRSDGFAAQPVMPWLSYNGSLP 360
GSVERATRNILVPSFAAAPEGSSSNPWPSSMQQFLYFLPRSDGFAAQPVMPWLSYNGSLP
Sbjct: 301 GSVERATRNILVPSFAAAPEGSSSNPWPSSMQQFLYFLPRSDGFAAQPVMPWLSYNGSLP 360
Query: 361 CALFYPXXXXXXNQQCHRDSEGVEFRVSQREGSLTGSNTXXXXXXXXXXXXXXXXXXXXX 420
CALFYP NQQCHRDSEGVEFRVSQREGSLTGSNT
Sbjct: 361 CALFYPAAAAAANQQCHRDSEGVEFRVSQREGSLTGSNTASSVVLGSSAAVPAAAAAAQN 420
Query: 421 XXXXXXRGQGNSREAAASPRLTKCESSASVTLLQRGFMPYKRCXXXXXXXXXXXXXXXXX 480
RGQGNSREAAASPRLTKCESSASVTLLQRGFMPYKRC
Sbjct: 421 SDVAESRGQGNSREAAASPRLTKCESSASVTLLQRGFMPYKRCAAESELLRSEAAGGEEA 480
Query: 481 XXXXXLTRLCL 491
LTRLCL
Sbjct: 481 VADGELTRLCL 491
>Os04g0583900 Similar to LHY protein
Length = 463
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 188/491 (38%), Positives = 240/491 (48%), Gaps = 52/491 (10%)
Query: 14 DENGADDRAGGESTVDHLRSHMNYGDMDLSGEEHVPKARKPYTITKQREKWTDEEHRLFL 73
D+ D G ++ +++L ++ MD+ E +PKARKPYTITKQREKWT++EH+LFL
Sbjct: 12 DQGPVADHVGHQNLMENLTDPLDSSGMDMMDEARIPKARKPYTITKQREKWTEDEHKLFL 71
Query: 74 EALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKVVREXXXXXXXXXXXXXXXXXXXIQ 133
EALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKV++E IQ
Sbjct: 72 EALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKVIKE-----SSGDNCNSLGAASSIQ 126
Query: 134 IXXXXXXXXXXXXXXXXVDGAAKKHVPALRQLEKPPLWMQSLSEQEEGSPTSVLTAAQIG 193
I + A K+VPAL+QLEKP L +QSL +Q+ GSPTSVLT QI
Sbjct: 127 IPPPRPKRKPVHPYPRNLGSTASKNVPALKQLEKPQLQVQSLYDQDNGSPTSVLTVPQIR 186
Query: 194 TEXXXXXXXXXXXXXXXXXXXXXXTDEHVDGGGSPASSVDREDGCLSPSIPTAELAMQAP 253
+ + GGSP S++D E+ C +PSI TAELAM+ P
Sbjct: 187 ADTLGS-----------------------ESGGSPTSTIDIEERCPTPSIATAELAMELP 223
Query: 254 --NTKMSIATTDAKEASSEAS---VFRLFGKSVVVKDSDQLHLLNGSNIAT------SGS 302
N + D +E + + S V RLFGK V+V D Q+ + N+ T S
Sbjct: 224 PTNDEEVKGNGDHEEVTCDRSGVPVLRLFGKRVMVNDLHQMSAPDAGNLQTVADMEVDAS 283
Query: 303 VERATRNILVPSFAAAPEGSSSNPWPSSMQQFLYFLPRSDGFAAQPVMPWLSY-NGSLPC 361
E T S A E ++ NPW ++ QQFLY+LP F+ +P +Y N + C
Sbjct: 284 AETPTSGTGKFSSHGAAEANTWNPWLTNTQQFLYYLPNGQIFSVHSALPCFTYHNEGVTC 343
Query: 362 ALF-YPXXXXXXNQQCHRDSEGVEFRVSQREGSLTGSNTXXXXXXXXXXXXXXXXXXXXX 420
F P Q H+ SE V+++ QREGS T SNT
Sbjct: 344 TQFSNPQVVASDQQHQHQTSEAVDYKGIQREGSWTESNT-------SSSSVPETATHNSE 396
Query: 421 XXXXXXRGQGNSREAAASPRLTKCESSASVTLLQRGFMPYKRCXXXXXXXXXXXXXXXXX 480
G N E SP KC S S +RGF+PYKRC
Sbjct: 397 TTESYRNGNRNEDEMVPSPDSRKCVSPGSN--CRRGFVPYKRC--VADSEALLKSQAPQE 452
Query: 481 XXXXXLTRLCL 491
+TRLCL
Sbjct: 453 EADGEMTRLCL 463
>Os06g0728700 Homeodomain-like containing protein
Length = 451
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 86/147 (58%), Gaps = 13/147 (8%)
Query: 45 EEHVPKARKPYTITKQREKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQK 104
EE K RKPYTITKQREKWT+EEH FLEAL+L+GR+WR+IQEHIGTKTAVQIRSHAQK
Sbjct: 49 EEFPVKVRKPYTITKQREKWTEEEHDKFLEALKLYGRSWRQIQEHIGTKTAVQIRSHAQK 108
Query: 105 FFSKVVREXXXXXXXXXXXXXXXXXXXIQIXXXXXXXXXXXXXXXXVDGAAKKHVPALRQ 164
FFSKVVRE I+I + PA Q
Sbjct: 109 FFSKVVRE-------------PGSNNAIEIPPPRPKRKPLHPYPRKCANSGSDANPATAQ 155
Query: 165 LEKPPLWMQSLSEQEEGSPTSVLTAAQ 191
L+ P S S+QE GSP SVL+A Q
Sbjct: 156 LKLAPGSSSSGSDQENGSPISVLSAMQ 182
>Os08g0157600 Homeodomain-like containing protein
Length = 719
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 66/74 (89%)
Query: 39 DMDLSGEEHVPKARKPYTITKQREKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQI 98
+++ SGEE V K RKPYTITKQRE+WT+ EH FLEAL+L+GRAW+RI+EH+GTKTAVQI
Sbjct: 2 EINSSGEEAVVKVRKPYTITKQRERWTEAEHNRFLEALKLYGRAWQRIEEHVGTKTAVQI 61
Query: 99 RSHAQKFFSKVVRE 112
RSHAQKFF+K+ +E
Sbjct: 62 RSHAQKFFTKLEKE 75
>Os01g0156000 Similar to Myb family DNA-binding protein
Length = 306
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 53/60 (88%)
Query: 50 KARKPYTITKQREKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKV 109
KARKPYTITK RE+W++EEH FL+AL ++GR W++I+EH+GTKT +QIRSHAQK+F KV
Sbjct: 21 KARKPYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEHVGTKTTIQIRSHAQKYFLKV 80
>Os06g0105800 Homeodomain-like containing protein
Length = 298
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 50 KARKPYTITKQREKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKV 109
+ RKPYTITK RE WTD EH FLEALQL R W++I+ ++G+KT +QIRSHAQK+F KV
Sbjct: 29 RVRKPYTITKSRESWTDPEHDKFLEALQLFDRDWKKIEAYVGSKTVIQIRSHAQKYFLKV 88
>Os05g0162800 Homeodomain-like containing protein
Length = 300
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 39/49 (79%)
Query: 50 KARKPYTITKQREKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQI 98
KARKPYTIT+ RE+W+ EEH FL+AL L GR W+RI+ + TKTA+Q+
Sbjct: 4 KARKPYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQV 52
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,727,062
Number of extensions: 504535
Number of successful extensions: 1302
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1310
Number of HSP's successfully gapped: 7
Length of query: 491
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 386
Effective length of database: 11,553,331
Effective search space: 4459585766
Effective search space used: 4459585766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)