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Os06g0728700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0385) R2 : 0.939
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.47 (0.141) R2dC : 0.3 R2C : 0.697
β3 : -4.67 (0.163) R2dE : 0.242 R2E : 0.639
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0984 (0.081) R2dN8 : 0.000276 R2N8 : -0.00128
σ : 0.722
deviance : 240.16
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_____
C
peak time of C : 9.37
E
wheather : temperature
threshold : 19.97
memory length : 315
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.6
open length of G : 4.08

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
230.21 0.713 12 -0.596 4.8 -4.52 0.256 -1.68 -0.178 9.27 19.8 287 15.9 4.04
231.86 0.709 12 -0.551 4.82 -4.32 0.748 -- -0.159 9.29 20 305 15.7 3.94
227.62 0.703 12 -0.511 4.66 -4.47 -- -1.76 -0.142 9.26 19.98 309 15.7 4.05
234.2 0.713 12 -0.476 4.57 -4.56 -- -- -0.153 9.33 20 311 15.7 4.05
391.94 0.922 12.1 -0.77 -- -7.01 -- 1.23 -0.155 -- 14.6 478 14.3 4.83
559.68 1.11 11.9 -0.869 7.67 -- 1.84 -- -0.33 8.78 -- -- -- --
570.98 1.12 11.9 -0.808 7.66 -- -- -- -0.33 8.77 -- -- -- --
365.3 0.89 12.1 -0.185 -- -7.27 -- -- -0.392 -- -15.25 523 13 6.67
240.16 0.722 11.9 -- 4.47 -4.67 -- -- -0.0984 9.37 19.97 315 15.6 4.08
3901.77 2.92 12.1 -0.798 -- -- -- -- -0.27 -- -- -- -- --
588.21 1.13 11.9 -- 7.66 -- -- -- -0.24 8.78 -- -- -- --
350.55 0.872 12.1 -- -- -7.86 -- -- -0.131 -- -2.096 494 13.1 6.92
3918.59 2.92 12.1 -- -- -- -- -- -0.182 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 236.85 temperature 20.0 270 > th dose independent rect. 16 4
2 241.02 temperature 20.0 270 > th dose independent rect. 15 6
4 253.94 wind 1.0 270 > th dose independent rect. 15 6
6 255.41 temperature 10.0 270 > th dose independent rect. 21 18
7 255.89 atmosphere 995.0 270 > th dose independent rect. 16 4
8 255.93 radiation 40.0 270 < th dose independent rect. 15 6
10 256.26 wind 9.0 270 < th dose independent rect. 15 6
12 257.90 temperature 10.0 270 > th dose dependent rect. 16 4
13 258.24 precipitation 0.1 270 < th dose independent rect. 15 6
14 258.24 precipitation 0.1 270 < th dose dependent rect. 15 6
15 258.31 wind 9.0 270 < th dose independent rect. 21 18
17 258.64 wind 1.0 270 > th dose independent rect. 16 4
20 259.58 atmosphere 1015.0 270 < th dose independent rect. 16 4
21 259.58 radiation 40.0 270 < th dose independent rect. 16 4
22 259.58 temperature 10.0 270 > th dose independent rect. 20 20
23 259.62 atmosphere 995.0 270 > th dose independent rect. 15 6
24 259.76 wind 9.0 270 < th dose independent rect. 16 4
26 260.81 atmosphere 1015.0 270 < th dose independent rect. 15 6
27 261.43 atmosphere 995.0 270 > th dose independent rect. 21 18
30 262.44 precipitation 0.1 270 < th dose independent rect. 21 18
31 262.44 precipitation 0.1 270 < th dose dependent rect. 21 18
32 263.49 wind 9.0 270 < th dose independent rect. 20 20
33 263.78 precipitation 0.1 270 < th dose independent rect. 16 4
34 263.78 precipitation 0.1 270 < th dose dependent rect. 16 4
36 264.37 radiation 1.0 30 < th dose dependent sin 21 NA
44 270.89 precipitation 0.1 270 < th dose independent rect. 20 20
45 270.89 precipitation 0.1 270 < th dose dependent rect. 20 20
47 272.03 radiation 10.0 90 < th dose dependent rect. 17 4
48 272.10 radiation 40.0 270 < th dose dependent rect. 16 4
50 273.10 humidity 90.0 270 < th dose independent rect. 16 4
59 275.50 radiation 1.0 30 < th dose independent sin 20 NA
60 275.57 radiation 1.0 30 > th dose independent sin 20 NA
67 276.34 atmosphere 995.0 270 > th dose independent rect. 20 20
72 277.78 radiation 1.0 270 > th dose independent rect. 9 7
79 279.86 wind 9.0 270 < th dose dependent rect. 16 4
90 280.58 humidity 50.0 270 > th dose independent rect. 21 18
94 281.35 humidity 50.0 90 > th dose independent rect. 17 4
113 283.91 radiation 10.0 90 < th dose dependent rect. 13 8
128 285.22 radiation 1.0 30 < th dose dependent rect. 6 15
144 286.84 radiation 1.0 30 < th dose dependent rect. 11 10
157 287.11 precipitation 0.1 270 < th dose independent rect. 9 7
158 287.11 precipitation 0.1 270 < th dose dependent rect. 9 7
170 288.74 temperature 10.0 270 > th dose independent rect. 9 7
171 288.74 atmosphere 1015.0 270 < th dose independent rect. 9 7
172 288.74 temperature 10.0 270 > th dose independent rect. 16 17
177 288.96 wind 9.0 270 < th dose independent rect. 16 17
181 289.12 atmosphere 1015.0 270 < th dose independent rect. 21 18
190 290.12 humidity 50.0 270 > th dose independent rect. 20 20
191 290.61 atmosphere 995.0 270 > th dose independent rect. 16 17
210 291.86 temperature 10.0 270 > th dose independent rect. 20 8
211 291.86 temperature 30.0 270 < th dose independent rect. 20 8
212 291.86 humidity 50.0 270 > th dose independent rect. 20 8
215 291.86 atmosphere 995.0 270 > th dose independent rect. 20 8
216 291.86 radiation 1.0 270 < th dose independent rect. 20 8
221 291.86 temperature 10.0 270 > th dose independent rect. 4 16
222 291.86 atmosphere 1015.0 270 < th dose independent rect. 4 16
223 291.86 radiation 20.0 270 < th dose dependent rect. 20 8
228 291.96 precipitation 0.1 270 < th dose independent rect. 16 17
229 291.96 precipitation 0.1 270 < th dose dependent rect. 16 17
230 292.07 wind 9.0 270 < th dose independent rect. 9 7
232 292.23 radiation 1.0 30 < th dose independent rect. 11 10
239 292.37 radiation 40.0 270 < th dose independent rect. 16 16
240 292.40 radiation 1.0 30 < th dose independent rect. 13 8
245 292.75 humidity 50.0 270 > th dose independent rect. 17 2
246 292.84 wind 9.0 270 < th dose independent rect. 20 8
250 293.07 radiation 1.0 10 < th dose dependent rect. 6 17
266 293.39 wind 9.0 270 < th dose independent rect. 4 16
281 293.94 humidity 50.0 90 > th dose independent rect. 17 6
343 297.45 precipitation 0.1 90 < th dose independent rect. 23 18
344 297.45 precipitation 0.1 90 < th dose dependent rect. 23 18
361 298.35 temperature 10.0 90 > th dose independent rect. 23 18
369 298.63 temperature 10.0 270 > th dose dependent rect. 9 6
370 298.64 atmosphere 995.0 270 > th dose independent rect. 9 6
422 301.36 wind 9.0 90 < th dose independent rect. 23 18
425 301.51 precipitation 0.1 270 < th dose independent rect. 4 16
426 301.51 precipitation 0.1 270 < th dose dependent rect. 4 16
434 301.77 radiation 1.0 30 < th dose independent rect. 6 17
460 303.29 atmosphere 995.0 270 > th dose independent rect. 4 16
474 304.34 precipitation 0.1 270 < th dose independent rect. 20 8
475 304.34 precipitation 0.1 270 < th dose dependent rect. 20 8
512 305.73 atmosphere 1015.0 270 < th dose independent rect. 20 20
575 309.71 wind 1.0 270 > th dose independent rect. 9 7
631 312.19 humidity 50.0 270 > th dose independent rect. 9 6
689 314.40 atmosphere 1015.0 90 < th dose independent rect. 23 18
734 316.39 atmosphere 995.0 270 > th dose dependent rect. 16 4
744 316.66 humidity 50.0 90 > th dose independent rect. 17 18
752 317.14 radiation 40.0 270 < th dose dependent rect. 16 16
787 318.31 radiation 1.0 30 > th dose independent rect. 10 8
818 319.66 humidity 90.0 270 < th dose independent rect. 9 6
871 322.43 humidity 50.0 90 > th dose independent rect. 17 16
959 326.25 humidity 60.0 10 > th dose independent rect. 17 6
978 327.18 temperature 10.0 270 > th dose independent rect. 2 8
979 327.18 atmosphere 995.0 270 > th dose independent rect. 2 8
980 327.18 atmosphere 1015.0 270 < th dose independent rect. 2 8
981 327.18 temperature 10.0 270 > th dose independent rect. 10 16
984 327.27 atmosphere 1015.0 270 < th dose dependent rect. 17 2
985 327.28 wind 9.0 270 < th dose independent rect. 2 8
991 327.51 humidity 60.0 10 > th dose independent rect. 18 3