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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0583900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LHY protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.25 (0.0468) R2 : 0.957
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.61 (0.199) R2dC : 0.0986 R2C : 0.461
β3 : -8.63 (0.213) R2dE : 0.493 R2E : 0.857
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.255 (0.0987) R2dN8 : 0.000826 R2N8 : 0.00214
σ : 0.875
deviance : 352.62
__
_____
C
peak time of C : 1.34
E
wheather : temperature
threshold : 4.52
memory length : 149
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5
open length of G : 9.86

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
341.69 0.868 9.23 0.584 4.07 -8.47 0.454 2.56 -0.16 1.23 7.556 136 5.09 9.76
341.7 0.861 9.23 0.546 3.87 -8.6 -1.12 -- -0.138 1.17 7.369 143 5.02 9.88
337.94 0.856 9.23 0.637 3.85 -8.61 -- 2.24 -0.14 1.37 6.58 144 5.03 9.81
346.17 0.867 9.24 0.521 3.63 -8.75 -- -- -0.191 1.26 5.854 151 5.02 9.85
416.42 0.95 9.2 0.944 -- -11.7 -- 3.69 0.0972 -- -1.945 232 4.66 10.1
1006.34 1.49 9.49 0.122 10.6 -- -0.0389 -- -0.668 0.0918 -- -- -- --
1006.34 1.49 9.49 0.124 10.6 -- -- -- -0.668 0.0918 -- -- -- --
395.76 0.927 9.21 0.562 -- -11.6 -- -- -0.242 -- -4.752 247 4.64 9.95
352.62 0.875 9.25 -- 3.61 -8.63 -- -- -0.255 1.34 4.52 149 5 9.86
8116.68 4.21 9.27 0.461 -- -- -- -- -0.514 -- -- -- -- --
1006.75 1.48 9.5 -- 10.6 -- -- -- -0.682 0.0925 -- -- -- --
402.04 0.934 9.23 -- -- -11.6 -- -- -0.317 -- -5.708 247 4.66 9.93
8122.28 4.21 9.28 -- -- -- -- -- -0.566 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 381.74 temperature 10.0 90 > th dose dependent rect. 5 10
9 442.35 temperature 15.0 10 > th dose dependent rect. 6 10
26 500.08 temperature 20.0 270 > th dose independent rect. 5 9
29 510.80 temperature 30.0 10 < th dose dependent rect. 2 17
62 548.34 precipitation 0.1 270 < th dose independent rect. 4 10
63 548.34 precipitation 0.1 270 < th dose dependent rect. 4 10
69 552.38 wind 9.0 270 < th dose independent rect. 4 10
71 552.63 radiation 10.0 270 < th dose dependent rect. 18 6
73 552.69 radiation 1.0 270 < th dose independent rect. 18 6
75 553.03 humidity 60.0 270 > th dose independent rect. 18 6
80 553.83 temperature 10.0 270 > th dose independent rect. 18 6
85 553.83 temperature 10.0 270 > th dose independent rect. 24 18
86 553.85 atmosphere 1015.0 270 < th dose independent rect. 24 18
87 554.05 atmosphere 995.0 270 > th dose independent rect. 18 6
88 554.22 wind 9.0 270 < th dose independent rect. 18 6
89 554.78 temperature 30.0 270 < th dose independent rect. 18 6
91 555.53 radiation 30.0 10 < th dose dependent rect. 14 16
93 556.11 temperature 10.0 10 > th dose dependent rect. 6 20
95 556.27 atmosphere 995.0 270 > th dose independent rect. 4 10
96 556.27 atmosphere 1015.0 270 < th dose independent rect. 4 10
97 556.27 temperature 10.0 270 > th dose independent rect. 14 14
105 559.35 radiation 40.0 270 < th dose independent rect. 14 14
107 559.99 precipitation 0.1 270 < th dose independent rect. 18 6
108 559.99 precipitation 0.1 270 < th dose dependent rect. 18 6
109 560.30 radiation 1.0 270 < th dose dependent rect. 24 18
111 560.75 wind 9.0 270 < th dose independent rect. 24 18
112 560.82 wind 9.0 270 < th dose independent rect. 14 14
113 561.02 precipitation 0.1 270 < th dose independent rect. 24 18
114 561.02 precipitation 0.1 270 < th dose dependent rect. 24 18
122 563.58 temperature 10.0 270 > th dose independent rect. 19 4
123 563.58 temperature 30.0 270 < th dose independent rect. 19 4
124 563.58 humidity 50.0 270 > th dose independent rect. 19 4
125 563.58 atmosphere 995.0 270 > th dose independent rect. 19 4
126 563.58 radiation 1.0 270 < th dose independent rect. 19 4
131 563.58 temperature 10.0 270 > th dose independent rect. 23 20
132 563.58 radiation 1.0 270 < th dose dependent rect. 19 4
139 564.14 wind 9.0 270 < th dose independent rect. 19 4
154 567.32 temperature 10.0 90 > th dose dependent rect. 6 19
155 567.63 radiation 1.0 270 < th dose independent rect. 24 17
157 567.95 wind 1.0 270 > th dose independent rect. 19 4
158 567.99 precipitation 0.1 270 < th dose independent rect. 19 4
159 567.99 precipitation 0.1 270 < th dose dependent rect. 19 4
165 570.41 atmosphere 1015.0 270 < th dose independent rect. 23 20
172 571.48 precipitation 0.1 270 < th dose independent rect. 23 20
173 571.48 precipitation 0.1 270 < th dose dependent rect. 23 20
193 572.07 wind 9.0 270 < th dose independent rect. 23 20
197 572.76 radiation 1.0 270 < th dose dependent rect. 24 11
200 573.85 temperature 25.0 90 < th dose independent rect. 2 17
208 574.84 atmosphere 995.0 270 > th dose independent rect. 24 18
210 575.20 radiation 1.0 270 < th dose dependent rect. 23 20
213 575.66 radiation 10.0 10 < th dose dependent rect. 2 18
215 575.97 wind 1.0 270 > th dose independent rect. 18 6
241 580.31 precipitation 0.1 270 < th dose independent rect. 14 14
242 580.31 precipitation 0.1 270 < th dose dependent rect. 14 14
248 581.63 radiation 1.0 90 > th dose independent rect. 4 11
265 582.68 radiation 1.0 270 < th dose independent rect. 24 11
267 583.25 humidity 50.0 270 > th dose dependent rect. 18 6
297 586.71 humidity 50.0 270 > th dose dependent rect. 19 4
303 587.91 wind 1.0 270 > th dose independent rect. 24 18
306 588.58 humidity 50.0 270 > th dose independent rect. 4 10
340 593.88 temperature 10.0 90 > th dose dependent rect. 20 19
423 599.93 wind 9.0 270 < th dose dependent rect. 19 4
424 600.24 radiation 1.0 270 < th dose independent rect. 24 6
425 600.62 radiation 1.0 90 < th dose independent rect. 2 17
427 600.86 radiation 20.0 10 < th dose dependent rect. 24 21
432 601.38 wind 9.0 270 < th dose dependent rect. 18 6
448 602.63 atmosphere 1015.0 270 < th dose independent rect. 19 4
477 604.86 radiation 1.0 90 < th dose dependent sin 2 NA
484 605.37 wind 7.0 270 < th dose independent rect. 24 5
486 605.63 atmosphere 1010.0 270 < th dose independent rect. 24 5
488 605.67 wind 9.0 270 < th dose independent rect. 5 19
490 605.69 temperature 15.0 270 > th dose independent rect. 24 5
493 605.72 temperature 30.0 270 < th dose independent rect. 24 5
494 605.72 humidity 50.0 270 > th dose independent rect. 24 5
497 605.72 atmosphere 995.0 270 > th dose independent rect. 24 5
499 605.72 radiation 20.0 270 < th dose independent rect. 24 5
502 605.72 temperature 10.0 270 > th dose independent rect. 5 19
503 605.75 radiation 40.0 270 < th dose dependent rect. 24 5
532 606.63 precipitation 0.1 270 < th dose independent rect. 24 5
533 606.63 precipitation 0.1 270 < th dose dependent rect. 24 5
545 607.72 radiation 20.0 14400 < th dose dependent rect. 21 6
553 608.68 precipitation 0.1 270 < th dose independent rect. 5 19
554 608.68 precipitation 0.1 270 < th dose dependent rect. 5 19
586 611.80 wind 1.0 270 > th dose independent rect. 24 5
596 612.66 radiation 40.0 270 < th dose independent rect. 24 18
597 612.82 atmosphere 1015.0 270 < th dose independent rect. 18 6
648 616.11 temperature 10.0 270 > th dose dependent rect. 19 4
655 616.64 radiation 1.0 10 > th dose independent rect. 6 10
658 616.72 temperature 10.0 10 > th dose dependent rect. 21 18
678 618.93 precipitation 0.1 10 < th dose independent rect. 20 6
679 618.93 precipitation 0.1 10 < th dose dependent rect. 20 6
681 619.18 temperature 10.0 10 > th dose independent rect. 20 6
682 619.18 temperature 30.0 10 < th dose independent rect. 20 6
683 619.18 humidity 50.0 10 > th dose independent rect. 20 6
686 619.18 atmosphere 995.0 10 > th dose independent rect. 20 6
687 619.18 radiation 1.0 10 < th dose independent rect. 20 6
692 619.18 temperature 10.0 10 > th dose independent rect. 2 18
694 619.18 atmosphere 1015.0 10 < th dose independent rect. 2 18
695 619.18 radiation 1.0 10 < th dose dependent rect. 20 6
700 619.20 wind 9.0 10 < th dose independent rect. 20 6
711 620.24 humidity 50.0 10 > th dose dependent rect. 20 6
738 622.85 atmosphere 995.0 270 > th dose independent rect. 14 15
740 622.96 radiation 40.0 270 < th dose dependent rect. 23 10
753 623.53 radiation 1.0 90 < th dose independent sin 2 NA
774 624.90 radiation 1.0 90 > th dose independent sin 2 NA
864 627.85 radiation 1.0 270 < th dose dependent sin 5 NA
994 630.98 precipitation 0.1 30 < th dose independent rect. 2 18
995 630.98 precipitation 0.1 30 < th dose dependent rect. 2 18