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Os08g0157600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0271) R2 : 0.967
β1 : -0.805 (0.101) R2dD : 0.0051 R2D : 0.00884
β2 : 3.42 (0.166) R2dC : 0.17 R2C : 0.606
β3 : -5.76 (0.194) R2dE : 0.351 R2E : 0.793
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0164 (0.0585) R2dN8 : -5.91e-06 R2N8 : -0.000732
σ : 0.505
deviance : 117.66
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C
peak time of C : 6.65
E
wheather : temperature
threshold : 13.31
memory length : 402
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.7
open length of G : 9.56

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.2 0.484 12.8 -0.404 4.07 -5.38 3.68 6.16 0.147 7.03 16.17 379 10.6 9.33
118.39 0.507 12.9 -0.851 3.52 -5.63 0.639 -- 0.0377 6.47 12.43 365 11.3 9.4
118.27 0.507 12.9 -0.699 3.52 -5.77 -- 1.16 0.0747 6.73 14.14 415 10.5 9.53
117.66 0.505 12.9 -0.805 3.42 -5.76 -- -- 0.0164 6.65 13.31 402 10.7 9.56
189.21 0.641 13 -1.21 -- -8.2 -- -0.691 0.377 -- 4.119 332 11.2 9.94
333.18 0.856 12.9 -1.45 7.85 -- 2.05 -- -0.284 6.66 -- -- -- --
343.77 0.868 12.9 -1.42 7.86 -- -- -- -0.29 6.65 -- -- -- --
141.31 0.554 12.9 -0.939 -- -8.27 -- -- 0.0869 -- -4.881 382 10.6 10.1
134.74 0.541 12.9 -- 3.18 -6.04 -- -- 0.115 6.73 13.47 396 10.7 9.67
3568.03 2.79 13 -1.24 -- -- -- -- -0.132 -- -- -- -- --
397 0.932 12.8 -- 7.85 -- -- -- -0.132 6.66 -- -- -- --
144.22 0.559 12.9 -- -- -8.84 -- -- 0.22 -- 3.331 413 10.2 10.4
3608.28 2.8 13 -- -- -- -- -- 0.00505 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.40 temperature 20 270 > th dose dependent rect. 12 9
8 128.02 temperature 10 270 > th dose dependent rect. 4 15
16 132.66 temperature 30 270 < th dose dependent rect. 9 16
17 133.59 temperature 20 270 > th dose dependent sin 20 NA
20 133.85 temperature 10 270 > th dose dependent sin 20 NA
52 142.02 temperature 25 270 > th dose independent rect. 12 8
73 147.63 temperature 30 270 < th dose dependent sin 20 NA
112 153.74 temperature 10 720 > th dose dependent rect. 7 8
161 160.10 temperature 30 720 < th dose dependent rect. 7 8
265 166.62 temperature 25 270 > th dose dependent rect. 12 21
279 167.40 temperature 20 10 > th dose dependent rect. 14 9
295 168.29 temperature 10 720 > th dose dependent sin 1 NA
388 171.88 temperature 30 270 < th dose independent rect. 9 16
394 172.08 temperature 30 720 < th dose dependent sin 1 NA
421 173.08 temperature 25 270 > th dose dependent rect. 12 16
502 176.06 temperature 10 270 > th dose dependent rect. 12 21
585 178.65 temperature 10 270 > th dose dependent rect. 13 19
631 180.57 radiation 1 270 < th dose independent sin 14 NA
726 183.04 radiation 1 270 < th dose independent rect. 8 19
760 183.60 temperature 20 10 > th dose dependent rect. 16 6
763 183.65 radiation 1 270 < th dose dependent sin 14 NA
788 184.24 radiation 1 270 < th dose dependent rect. 8 19
843 185.20 temperature 25 10 > th dose independent rect. 14 7
863 185.62 radiation 1 270 > th dose independent sin 14 NA
926 186.83 radiation 1 270 < th dose independent rect. 13 14
930 186.89 temperature 25 270 > th dose independent sin 20 NA
932 187.01 radiation 1 270 < th dose independent rect. 15 12
990 188.20 radiation 1 270 < th dose dependent rect. 13 14
996 188.33 radiation 1 270 < th dose dependent rect. 15 12