Os06g0105800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os06g0105800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.74 | 0.243 | 11.5 | 0.238 | 1.6 | 0.741 | 0.0812 | 0.189 | 0.0826 | 4.99 | 31.1 | 89 | -- | -- |
| 26.76 | 0.241 | 11.5 | 0.261 | 1.6 | 0.755 | 0.145 | -- | 0.085 | 5.02 | 31.29 | 77 | -- | -- |
| 26.75 | 0.241 | 11.5 | 0.236 | 1.6 | 0.748 | -- | 0.228 | 0.0812 | 4.99 | 31.18 | 89 | -- | -- |
| 26.77 | 0.241 | 11.5 | 0.268 | 1.62 | 0.763 | -- | -- | 0.0838 | 5.01 | 31.4 | 63 | -- | -- |
| 121.5 | 0.513 | 11.5 | 0.529 | -- | 2.28 | -- | 0.767 | 0.317 | -- | 32.76 | 229 | -- | -- |
| 33.58 | 0.272 | 11.5 | 0.0944 | 1.81 | -- | 0.226 | -- | -0.0394 | 4.75 | -- | -- | -- | -- |
| 33.71 | 0.272 | 11.5 | 0.0933 | 1.82 | -- | -- | -- | -0.0406 | 4.74 | -- | -- | -- | -- |
| 122.16 | 0.515 | 11.4 | 0.65 | -- | 2.41 | -- | -- | 0.328 | -- | 42.42 | 226 | -- | -- |
| 28.41 | 0.248 | 11.5 | -- | 1.65 | 0.633 | -- | -- | 0.0408 | 4.98 | 31.4 | 49 | -- | -- |
| 208.34 | 0.674 | 11.5 | 0.162 | -- | -- | -- | -- | 0.00669 | -- | -- | -- | -- | -- |
| 33.94 | 0.273 | 11.5 | -- | 1.82 | -- | -- | -- | -0.051 | 4.74 | -- | -- | -- | -- |
| 132.5 | 0.536 | 11.5 | -- | -- | 2.16 | -- | -- | 0.236 | -- | 33.99 | 221 | -- | -- |
| 209.04 | 0.675 | 11.5 | -- | -- | -- | -- | -- | -0.0113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 3 | 23.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 14 | 24.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 20 |
| 90 | 25.52 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 12 |
| 111 | 25.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 146 | 26.02 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 19 |
| 170 | 26.14 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 17 |
| 177 | 26.18 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 21 |
| 189 | 26.23 | temperature | 25 | 720 | > th | dose independent | sin | 1 | NA |
| 200 | 26.26 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 15 |
| 215 | 26.31 | temperature | 25 | 720 | < th | dose independent | sin | 2 | NA |
| 234 | 26.37 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 21 |
| 272 | 26.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 289 | 26.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 5 |
| 318 | 26.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 319 | 26.64 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 328 | 26.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 333 | 26.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 339 | 26.69 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 342 | 26.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 370 | 26.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 371 | 26.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 373 | 26.77 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 377 | 26.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 383 | 26.79 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 433 | 26.87 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 445 | 26.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 459 | 26.91 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 9 |
| 465 | 26.92 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 469 | 26.92 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 473 | 26.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 482 | 26.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 484 | 26.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 488 | 26.94 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 492 | 26.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 13 |
| 531 | 26.98 | radiation | 20 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 541 | 26.99 | radiation | 10 | 4320 | < th | dose independent | sin | 13 | NA |
| 565 | 27.01 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 9 | 20 |
| 579 | 27.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 593 | 27.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 640 | 27.13 | temperature | 25 | 30 | > th | dose dependent | sin | 9 | NA |
| 642 | 27.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 10 |
| 644 | 27.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 654 | 27.14 | radiation | 10 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 676 | 27.16 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 687 | 27.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 730 | 27.20 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 739 | 27.22 | radiation | 40 | 4320 | < th | dose dependent | rect. | 15 | 17 |
| 741 | 27.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 14 |
| 778 | 27.26 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 11 | 19 |
| 783 | 27.27 | radiation | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 805 | 27.28 | radiation | 40 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 816 | 27.29 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 819 | 27.29 | radiation | 1 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 837 | 27.30 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 853 | 27.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 877 | 27.31 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 879 | 27.32 | radiation | 1 | 4320 | < th | dose independent | rect. | 22 | 8 |
| 906 | 27.33 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 4 |
| 955 | 27.35 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |