BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0150600 Os08g0150600|AK122058
(141 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0150600 Conserved hypothetical protein 270 3e-73
Os08g0150500 Cyclin-like F-box domain containing protein 205 8e-54
Os08g0149100 Conserved hypothetical protein 90 4e-19
Os08g0150200 Conserved hypothetical protein 83 6e-17
Os08g0149050 Conserved hypothetical protein 72 1e-13
Os10g0126800 Cyclin-like F-box domain containing protein 69 1e-12
Os08g0199000 Conserved hypothetical protein 68 2e-12
Os08g0197000 Cyclin-like F-box domain containing protein 67 5e-12
Os08g0197300 Leucine-rich repeat 2 containing protein 66 7e-12
Os02g0188900 Cyclin-like F-box domain containing protein 64 4e-11
Os11g0201332 Cyclin-like F-box domain containing protein 63 6e-11
>Os08g0150600 Conserved hypothetical protein
Length = 141
Score = 270 bits (689), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 133/141 (94%), Positives = 133/141 (94%)
Query: 1 MSVSFTSXXXXXXXXSFRSRQNEVLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLR 60
MSVSFTS SFRSRQNEVLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLR
Sbjct: 1 MSVSFTSDEDEDEDDSFRSRQNEVLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLR 60
Query: 61 CSPIIEKLTLHLGMIEGLAWEQWMSYPQEETPDLSFSCERLKKVKIICVQDDKRVPAIVN 120
CSPIIEKLTLHLGMIEGLAWEQWMSYPQEETPDLSFSCERLKKVKIICVQDDKRVPAIVN
Sbjct: 61 CSPIIEKLTLHLGMIEGLAWEQWMSYPQEETPDLSFSCERLKKVKIICVQDDKRVPAIVN 120
Query: 121 AILANANSLPEIVIKPYKRFD 141
AILANANSLPEIVIKPYKRFD
Sbjct: 121 AILANANSLPEIVIKPYKRFD 141
>Os08g0150500 Cyclin-like F-box domain containing protein
Length = 527
Score = 205 bits (522), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 107/126 (84%)
Query: 16 SFRSRQNEVLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLRCSPIIEKLTLHLGMI 75
+F+ QNEVLKRDL RC++FN+LKKLSV DW VD +L LI+LLRCSPI+EKLTLHLG+I
Sbjct: 402 AFQLMQNEVLKRDLWRCRTFNSLKKLSVSDWCVDGELHTLIHLLRCSPILEKLTLHLGVI 461
Query: 76 EGLAWEQWMSYPQEETPDLSFSCERLKKVKIICVQDDKRVPAIVNAILANANSLPEIVIK 135
GLAWEQWMSYPQ E PD+SF CE LKKVKI C DDKRVPAIVNAIL NANSLPEIVIK
Sbjct: 462 GGLAWEQWMSYPQSEMPDMSFICEHLKKVKITCANDDKRVPAIVNAILVNANSLPEIVIK 521
Query: 136 PYKRFD 141
PY R D
Sbjct: 522 PYTRLD 527
>Os08g0149100 Conserved hypothetical protein
Length = 226
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 76/123 (61%), Gaps = 5/123 (4%)
Query: 22 NEVLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLRCSPIIEKLTLHLGMIEGLAWE 81
++VL RDL RC++F+NLK+L + +W++ L++LLR SP IEKL L L + +E
Sbjct: 99 SKVLMRDLPRCKAFDNLKRLKLGEWFLRNGCYPLLFLLRYSPHIEKLRLQLTKLGAEEYE 158
Query: 82 QWMSYPQEETPDL-----SFSCERLKKVKIICVQDDKRVPAIVNAILANANSLPEIVIKP 136
++ + P +F CE+L +++I+ Q DKRV IV ++AN + LPEI IKP
Sbjct: 159 KFPTAAAAIDPPCKEAARTFHCEKLTEIEIVYPQGDKRVHIIVRILIANISPLPEIKIKP 218
Query: 137 YKR 139
+ +
Sbjct: 219 FPK 221
>Os08g0150200 Conserved hypothetical protein
Length = 174
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 23 EVLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLRCSPIIEKLTLHLGMIEGLAWEQ 82
+VL RDL RC F+NL L++ + + L+YLLR SP IEKL+LHL A++
Sbjct: 50 KVLLRDLPRCGIFSNLTSLALGELFFSDGCYPLLYLLRHSPNIEKLSLHLVKHGAYAYDH 109
Query: 83 WMSY--------PQEETPDLSFSCERLKKVKIICVQDDKRVPAIVNAILANANSLPEIVI 134
+ P E + +CE+L+K+KIIC Q D+RV IV + + N LP+I I
Sbjct: 110 DTNSANATADLDPTCEGTGTAVNCEKLRKIKIICPQGDRRVHIIVKILFSIINPLPQIKI 169
Query: 135 KP 136
P
Sbjct: 170 HP 171
>Os08g0149050 Conserved hypothetical protein
Length = 137
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 24 VLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLRCSPIIEKLTLHLGMIEGLAWEQW 83
VL R RC++F+NLK L + +W++ L++LLR SP IEKL L L +E +
Sbjct: 17 VLIRSFPRCKTFSNLKYLKLGEWFLRDGCYPLLFLLRRSPNIEKLHLQLNKYGSDDYEDY 76
Query: 84 MSYPQEETPDLS-----FSCERLKKVKIICVQDDKRVPAIVNAILANANSLPEIVIKP 136
P F+C +L+K+ I Q D+RV IV ++AN + LP I IKP
Sbjct: 77 PDAAAAIDPTCREIEEMFNCVKLRKITIFYPQGDERVHIIVRILIANISPLPAIKIKP 134
>Os10g0126800 Cyclin-like F-box domain containing protein
Length = 454
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 24 VLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLRCSPIIEKLTLHLGMIEGLAWEQW 83
++ +L+ C F NL L++ W +D + LI L+ SPI+EKLTL L M ++
Sbjct: 339 TMENNLQLCPKFINLVSLTLGPWCLDANFYGLIVFLQNSPILEKLTLELAMYRTGKLQRI 398
Query: 84 MSYPQEETPDLSFSCERLKKVKIICVQDDKRVPAIVNAILANANSLPEIVIKPYKR 139
+ +E SF+CE L V++IC++DD V +VN + + S +I IK + +
Sbjct: 399 IGQIEER----SFTCEHLTSVEVICLEDDPLVNDVVNFFVNSGMSSVQIHIKQWSQ 450
>Os08g0199000 Conserved hypothetical protein
Length = 115
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 17/116 (14%)
Query: 27 RDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLRCSPIIEKLTLHLGMIEGLAWEQWMSY 86
R+LRRC +F NLK LS+ +W + + LI+LL+ SP +E L L L +SY
Sbjct: 3 RELRRCSTFGNLKTLSLGEWCMAAEFDGLIFLLQESPNLEMLFLKL----------ELSY 52
Query: 87 PQEETPDL-------SFSCERLKKVKIICVQDDKRVPAIVNAILANANSLPEIVIK 135
+E ++ SF+C+ L+ V I C +DD+RV + +AN + +I ++
Sbjct: 53 SNKEAINIGFELKERSFACKNLEVVNIRCSKDDERVHMLAEIFVANGLPIEKIYVR 108
>Os08g0197000 Cyclin-like F-box domain containing protein
Length = 516
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 24 VLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLRCSPIIEKLTLHLGMIEGLAWEQW 83
+L+R L FNNLK LS+ +W + D SAL +L+ SP +E+L LHL MI
Sbjct: 370 LLRRQLENFPMFNNLKTLSLGEWCMVPDFSALSTILKKSPKVERLYLHLDMIH------- 422
Query: 84 MSYPQEETPDLSFSCERLKKVKIICVQDDKRVPAIVNAILANANSLPEIV 133
+ SF+C L+KVKI C +DD+ V + + N SL +IV
Sbjct: 423 RGRGDIDPSGGSFACNNLRKVKITCCKDDEMVHMLKQFLQRNGISLEKIV 472
>Os08g0197300 Leucine-rich repeat 2 containing protein
Length = 369
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 24 VLKRDLRRCQSFNNLKKLSVDDWYVDV--DLSALIYLLRCSPIIEKLTLHLGMIEGLAWE 81
VL R+ R C +F+NLK LS+ +W + + D LI L+ SP +EKL L L M + E
Sbjct: 236 VLSRESRSCPTFSNLKTLSLGEWCISMVADFDILILFLQNSPNLEKLFLQLEMSYNIQKE 295
Query: 82 QWMSYPQEETPDLSFSCERLKKVKIICVQDDKRVPAIVNAILANANSLPEIVIKPYKRF 140
+ SF+C+RL VKI C +DD RV + +N SL +I ++ F
Sbjct: 296 LEKGIKPKGG---SFACKRLSTVKIRCTKDDLRVHMLAQLFNSNGLSLEKIFVRRSGSF 351
>Os02g0188900 Cyclin-like F-box domain containing protein
Length = 432
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 24 VLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLRCSPIIEKLTLHLGMIEGLAWEQW 83
+K + + C F NL L++ W +D D LI L+ SP +EKLTL L E++
Sbjct: 291 TIKNNPQLCPKFINLVDLTLGQWCLDSDFYVLIIFLQSSPKLEKLTLKL--------EKY 342
Query: 84 MSYPQE-----ETPDLSFSCERLKKVKIICVQDDKRVPAIVNAILAN 125
+P E E + SF+CE LK V+IIC++DD+ + IV + +
Sbjct: 343 YPHPYEHIIGDELTERSFTCEHLKIVEIICMEDDEPLAKIVEGLFVD 389
>Os11g0201332 Cyclin-like F-box domain containing protein
Length = 425
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 24 VLKRDLRRCQSFNNLKKLSVDDWYVDVDLSALIYLLRCSPIIEKLTLHLGMIEGLAWEQW 83
+LKRDLR C +F NLK L + W+ D ALI +L+ SP++EKLTL L +
Sbjct: 287 ILKRDLRWCPTFTNLKTLLLSQWFESSDHCALICILQHSPVLEKLTLQLSKKSVINVRSR 346
Query: 84 MSYPQEETPDLSFSCERLKKVKIICVQDDKRVPAIVNAILANANSLP 130
Y E SF+ E LK V++ C D+RV ++ ++ N+ +P
Sbjct: 347 AIYNSMEK---SFTSENLKTVEVKCQDIDQRVHKLMKSL--NSYGIP 388
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,330,176
Number of extensions: 159796
Number of successful extensions: 441
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 13
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)