Os08g0197000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os08g0197000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.92 | 0.325 | 8.59 | 2.1 | 0.354 | -1.13 | 0.647 | -0.0437 | 0.416 | 19.3 | 24.9 | 1487 | -- | -- |
| 47.92 | 0.322 | 8.59 | 2.1 | 0.353 | -1.13 | 0.646 | -- | 0.414 | 19.3 | 24.9 | 1502 | -- | -- |
| 48.97 | 0.326 | 8.59 | 2.09 | 0.363 | -1.14 | -- | -0.036 | 0.417 | 18.8 | 24.82 | 1421 | -- | -- |
| 48.97 | 0.326 | 8.59 | 2.08 | 0.363 | -1.14 | -- | -- | 0.415 | 18.8 | 24.9 | 1421 | -- | -- |
| 49.86 | 0.329 | 8.58 | 2.04 | -- | -1.21 | -- | 0.574 | 0.444 | -- | 37.72 | 572 | -- | -- |
| 64.74 | 0.377 | 8.54 | 2.44 | 0.334 | -- | 0.723 | -- | 0.649 | 19.5 | -- | -- | -- | -- |
| 66.14 | 0.381 | 8.54 | 2.43 | 0.338 | -- | -- | -- | 0.651 | 19.2 | -- | -- | -- | -- |
| 50.1 | 0.33 | 8.57 | 2.14 | -- | -1.2 | -- | -- | 0.47 | -- | 46.87 | 573 | -- | -- |
| 71.49 | 0.394 | 8.73 | -- | 0.338 | -1.97 | -- | -- | -0.207 | 18.7 | 35.68 | 47520 | -- | -- |
| 72.2 | 0.397 | 8.53 | 2.42 | -- | -- | -- | -- | 0.645 | -- | -- | -- | -- | -- |
| 221.21 | 0.696 | 8.6 | -- | 0.316 | -- | -- | -- | 0.381 | 19.7 | -- | -- | -- | -- |
| 77.44 | 0.41 | 8.73 | -- | -- | -1.96 | -- | -- | -0.211 | -- | 47.49 | 47520 | -- | -- |
| 226.6 | 0.703 | 8.59 | -- | -- | -- | -- | -- | 0.377 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 17 | 47.28 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 24 | 47.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 30 | 47.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 42 | 47.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 51 | 47.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 60 | 47.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 167 | 47.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 170 | 47.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 21 |
| 179 | 47.95 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 195 | 47.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 226 | 48.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 227 | 48.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 277 | 48.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 293 | 48.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 455 | 48.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 21 |
| 734 | 48.84 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 832 | 49.00 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 993 | 49.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 20 |