BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0604400 Os07g0604400|J075149E16
(104 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0604400 Similar to BRITTLE CULM1 217 1e-57
Os03g0416200 BRITTLE CULM1 145 5e-36
Os05g0386800 Similar to Phytochelatin synthetase-like prote... 136 3e-33
AK102170 131 1e-31
Os07g0604300 Similar to Phytochelatin synthetase (Fragment) 124 1e-29
Os03g0416300 Similar to Phytochelatin synthetase (Fragment) 122 5e-29
Os04g0540300 Phytochelatin synthetase-like conserved region... 116 3e-27
Os10g0497700 Similar to Phytochelatin synthetase 89 7e-19
>Os07g0604400 Similar to BRITTLE CULM1
Length = 104
Score = 217 bits (553), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MAAPLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNIT 60
MAAPLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNIT
Sbjct: 1 MAAPLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNIT 60
Query: 61 EVFSFDYKPVVSYGSISKYFMRISVILAVSSSLQTSKNSVISNV 104
EVFSFDYKPVVSYGSISKYFMRISVILAVSSSLQTSKNSVISNV
Sbjct: 61 EVFSFDYKPVVSYGSISKYFMRISVILAVSSSLQTSKNSVISNV 104
>Os03g0416200 BRITTLE CULM1
Length = 468
Score = 145 bits (367), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 71/80 (88%)
Query: 2 AAPLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITE 61
APLLQCT+HMCP+RVHWHVKLNY++YWRAKI I NFNYRMNYT WTLVAQHPNL+N+TE
Sbjct: 299 GAPLLQCTSHMCPIRVHWHVKLNYKDYWRAKIAITNFNYRMNYTQWTLVAQHPNLNNVTE 358
Query: 62 VFSFDYKPVVSYGSISKYFM 81
VFSF YKP++ YG+I+ M
Sbjct: 359 VFSFQYKPLLPYGNINDTGM 378
>Os05g0386800 Similar to Phytochelatin synthetase-like protein 2
Length = 457
Score = 136 bits (342), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 65/74 (87%)
Query: 2 AAPLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITE 61
PL+QCT+HMCP+R+HWHVKLNY+EYWR KITI NFNYRMNYT W LVAQHPN +NIT+
Sbjct: 285 GQPLVQCTSHMCPIRIHWHVKLNYKEYWRVKITITNFNYRMNYTQWNLVAQHPNFNNITQ 344
Query: 62 VFSFDYKPVVSYGS 75
+FSF+YKP+ YGS
Sbjct: 345 LFSFNYKPLTPYGS 358
>AK102170
Length = 457
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 63/74 (85%)
Query: 2 AAPLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITE 61
PL+QCT+HMCP+R+HWHVKLNY+EYWR K+TI NFNYRMNYT W LV QHPN +NIT+
Sbjct: 285 GQPLVQCTSHMCPIRIHWHVKLNYKEYWRVKVTITNFNYRMNYTQWNLVIQHPNFNNITQ 344
Query: 62 VFSFDYKPVVSYGS 75
+FSF+YKP+ YG
Sbjct: 345 LFSFNYKPLTPYGG 358
>Os07g0604300 Similar to Phytochelatin synthetase (Fragment)
Length = 446
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 64/78 (82%)
Query: 4 PLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEVF 63
PL+QCT+HMCP+RVHWHVK+NY+EYWR KIT+ NFNYRMNY+ W LV QHP+ DN+T +F
Sbjct: 277 PLVQCTSHMCPIRVHWHVKVNYKEYWRVKITVTNFNYRMNYSQWNLVTQHPSFDNLTTIF 336
Query: 64 SFDYKPVVSYGSISKYFM 81
SF+YK + YG I+ M
Sbjct: 337 SFNYKSLNPYGVINDTAM 354
>Os03g0416300 Similar to Phytochelatin synthetase (Fragment)
Length = 458
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 72/101 (71%), Gaps = 8/101 (7%)
Query: 4 PLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEVF 63
PL+QCT HMCP+RVHWHVKLNYR+YWR K+TI N+NYRMNY+ W LV QHPN +N++ VF
Sbjct: 279 PLVQCTPHMCPIRVHWHVKLNYRDYWRVKVTITNWNYRMNYSQWNLVVQHPNFENVSTVF 338
Query: 64 SFDYKPVVSYGSIS--------KYFMRISVILAVSSSLQTS 96
SF+YK + YG I+ KY+ + ++ ++Q+
Sbjct: 339 SFNYKSLNPYGVINDTAMMWGVKYYNDLLMVAGPDGNVQSE 379
>Os04g0540300 Phytochelatin synthetase-like conserved region family protein
Length = 372
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 64/79 (81%)
Query: 3 APLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQHPNLDNITEV 62
AP+ +CT HMCPVRVHWHVK++YREYWR K+TI N+N NY+ W LV QHPNL ++T++
Sbjct: 205 APVFRCTDHMCPVRVHWHVKISYREYWRVKVTITNYNQVKNYSDWNLVVQHPNLRSLTQL 264
Query: 63 FSFDYKPVVSYGSISKYFM 81
FSF+Y+P++ YG+++ M
Sbjct: 265 FSFNYQPLIEYGTLNDTGM 283
>Os10g0497700 Similar to Phytochelatin synthetase
Length = 425
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%), Gaps = 3/79 (3%)
Query: 4 PLLQCTTHMCPVRVHWHVKLNYREYWRAKITIVNFNYRMNYTGWTLVAQ-HPNLDNITEV 62
PLLQCT+HMCPV+++WH+ L +E++R KIT+ N NYRMN+T W LV Q HP LD IT++
Sbjct: 280 PLLQCTSHMCPVKINWHLMLKDKEHYRVKITVTNLNYRMNFTEWNLVVQYHPILD-ITQI 338
Query: 63 FSFDYKPVVSYGSISKYFM 81
F+YK + G I+ M
Sbjct: 339 SGFNYK-SIQVGKINDTTM 356
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.132 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,938,581
Number of extensions: 91334
Number of successful extensions: 341
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 8
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)