Os04g0540300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phytochelatin synthetase-like conserved region family protein.
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Os04g0540300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phytochelatin synthetase-like conserved region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 314.03 | 0.833 | 4.13 | -0.13 | 0.134 | 1.7 | 1.01 | 4.86 | -0.663 | 6.26 | 20.8 | 5127 | -- | -- |
| 330.25 | 0.846 | 4.37 | -0.707 | 0.149 | 0.868 | 0.669 | -- | -0.943 | 5.88 | 29.1 | 9573 | -- | -- |
| 316.52 | 0.829 | 4.14 | -0.115 | 0.136 | 1.7 | -- | 4.86 | -0.663 | 6.19 | 20.83 | 5144 | -- | -- |
| 331.35 | 0.848 | 4.36 | -0.712 | 0.129 | 0.874 | -- | -- | -0.933 | 7.2 | 29.4 | 9578 | -- | -- |
| 317.01 | 0.829 | 4.13 | -0.205 | -- | 1.79 | -- | 4.93 | -0.677 | -- | 20.6 | 5604 | -- | -- |
| 358.28 | 0.887 | 4.27 | -0.432 | 0.133 | -- | 0.859 | -- | -0.589 | 5.45 | -- | -- | -- | -- |
| 360.06 | 0.889 | 4.27 | -0.431 | 0.14 | -- | -- | -- | -0.593 | 4.7 | -- | -- | -- | -- |
| 332.15 | 0.849 | 4.36 | -0.723 | -- | 0.872 | -- | -- | -0.926 | -- | 29.4 | 9756 | -- | -- |
| 343.86 | 0.864 | 4.31 | -- | 0.143 | 0.725 | -- | -- | -0.763 | 6.28 | 29.4 | 9227 | -- | -- |
| 361.1 | 0.888 | 4.28 | -0.425 | -- | -- | -- | -- | -0.589 | -- | -- | -- | -- | -- |
| 364.95 | 0.894 | 4.26 | -- | 0.132 | -- | -- | -- | -0.545 | 4.79 | -- | -- | -- | -- |
| 344.74 | 0.865 | 4.32 | -- | -- | 0.711 | -- | -- | -0.782 | -- | 29.4 | 9725 | -- | -- |
| 365.87 | 0.893 | 4.27 | -- | -- | -- | -- | -- | -0.542 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 315.26 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 3 | 315.58 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 4 | 315.67 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 16 | 316.95 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 9 |
| 19 | 317.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 39 | 317.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 44 | 317.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 67 | 317.49 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 9 |
| 83 | 317.60 | temperature | 25 | 4320 | < th | dose dependent | sin | 10 | NA |
| 130 | 317.80 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 152 | 317.91 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 167 | 317.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 205 | 318.21 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 215 | 318.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 219 | 318.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 226 | 318.28 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 230 | 318.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 235 | 318.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 261 | 318.43 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 266 | 318.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 324 | 318.62 | temperature | 20 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 348 | 318.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 360 | 318.74 | humidity | 70 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 378 | 318.78 | humidity | 70 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 387 | 318.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 20 |
| 442 | 318.96 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 473 | 319.01 | temperature | 20 | 14400 | < th | dose dependent | rect. | 24 | 17 |
| 602 | 319.34 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 635 | 319.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 645 | 319.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 714 | 319.67 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 812 | 319.88 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 894 | 320.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 974 | 320.19 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |