BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0475700 Os07g0475700|AK060076
(120 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0475700 Auxin responsive SAUR protein family protein 211 7e-56
Os09g0546900 Similar to Auxin induced protein 71 2e-13
Os09g0547000 Similar to Auxin induced protein 69 1e-12
Os09g0546000 Similar to Auxin induced protein 68 2e-12
Os09g0545280 Similar to Auxin induced protein 66 6e-12
Os09g0546800 Similar to Auxin induced protein 65 9e-12
Os09g0547100 Similar to Auxin induced protein 65 9e-12
Os09g0546100 Auxin responsive SAUR protein family protein 64 3e-11
>Os07g0475700 Auxin responsive SAUR protein family protein
Length = 120
Score = 211 bits (538), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/120 (89%), Positives = 107/120 (89%)
Query: 1 MVSSLRLAEISRKWSGSGSSKVTSPTAAAAACPRGHFAAYTRDGSRFFVPIACLASDTFR 60
MVSSLRLAEISRKWSGSGSSKVTSPTAAAAACPRGHFAAYTRDGSRFFVPIACLASDTFR
Sbjct: 1 MVSSLRLAEISRKWSGSGSSKVTSPTAAAAACPRGHFAAYTRDGSRFFVPIACLASDTFR 60
Query: 61 ELLSTAEEEFGSPGGRPIVLPCSADRLHQILAAFRSASGKNKCXXXXXXXXXXXXXTKIW 120
ELLSTAEEEFGSPGGRPIVLPCSADRLHQILAAFRSASGKNKC TKIW
Sbjct: 61 ELLSTAEEEFGSPGGRPIVLPCSADRLHQILAAFRSASGKNKCSPPSGSGGRAGGRTKIW 120
>Os09g0546900 Similar to Auxin induced protein
Length = 144
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 9/104 (8%)
Query: 1 MVSSLRLAEISRKW---SGSGSSKVT--SPTAAAAACP----RGHFAAYTRDGSRFFVPI 51
M+S+ RLA++++KW + G ++T +P A C +GH YT DG RF VP+
Sbjct: 1 MISAKRLAQMAKKWQRIAALGRKRITWTTPKATDECCSSVAVKGHCIMYTADGRRFEVPL 60
Query: 52 ACLASDTFRELLSTAEEEFGSPGGRPIVLPCSADRLHQILAAFR 95
A LA+ F ELL ++EEFG I LPC A+ + +L R
Sbjct: 61 AFLATTIFAELLRMSQEEFGFTTDGGITLPCDAEVMEYVLCLLR 104
>Os09g0547000 Similar to Auxin induced protein
Length = 141
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 1 MVSSLRLAEISRKW------SGSGSSKVT--SPTAAAAACPRGHFAAYTRDGSRFFVPIA 52
M+SS +LA++ +KW SG ++ + TA A +GH YT DG+RF VP+
Sbjct: 1 MISSRKLAQLGKKWQRMVASSGRQTASIDGCCSTATAYVADKGHCVLYTTDGARFEVPLM 60
Query: 53 CLASDTFRELLSTAEEEFGSPGGRPIVLPCSADRLHQILAAFR 95
L + F ELL ++EEFG I LPC A + ++ R
Sbjct: 61 YLNTAIFCELLRVSQEEFGFASNNKITLPCDASVMEYVMCLIR 103
>Os09g0546000 Similar to Auxin induced protein
Length = 144
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 1 MVSSLRLAEISRKWS-----GSGSSKVTSPTAAAAACP----RGHFAAYTRDGSRFFVPI 51
M+S+ RLA++ +KW G T+P A C +GH YT DG RF VP+
Sbjct: 1 MISAKRLAQMVKKWQRMAAFGRKRLTWTAPKATDKCCSSVAVKGHCIMYTADGRRFEVPL 60
Query: 52 ACLASDTFRELLSTAEEEFGSPGGRPIVLPCSADRLHQILAAFR 95
A LA+ F ELL ++EEFG I LPC A+ + ++ +
Sbjct: 61 AFLATTIFAELLRISQEEFGFTSDGGITLPCDAEVMEYVMCLLK 104
>Os09g0545280 Similar to Auxin induced protein
Length = 171
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 1 MVSSLRLAEISRKWSG-----------SGSSKVTSPTAAAAACPRGHFAAYTRDGSRFFV 49
M++ RL +++KW +G++K + ++A +GH YT DG RF V
Sbjct: 27 MINPKRLVHLAKKWQHMAALGRRRLTITGATKEGNLRCSSAIADKGHCIIYTADGERFGV 86
Query: 50 PIACLASDTFRELLSTAEEEFGSPGGRPIVLPCSADRLHQILAAFR 95
P+ L++ F ELL +E+EFG G I LPC A + ++ R
Sbjct: 87 PLTYLSTTVFGELLRLSEDEFGFTGEEKITLPCEAAVMEYVMCLLR 132
>Os09g0546800 Similar to Auxin induced protein
Length = 141
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 1 MVSSLRLAEISRKW---SGSGSSKVTSPTAAAAAC-----PRGHFAAYTRDGSRFFVPIA 52
M+S+ R+A++++KW + G ++T C +GH A YT DGSRF VP+A
Sbjct: 1 MISARRVAQLAKKWQRMAALGRKRLTVRAKQDQECCSSMAGKGHCAMYTADGSRFEVPLA 60
Query: 53 CLASDTFRELLSTAEEEFG-SPGGRPIVLPCSADRLHQILAAFR 95
L + F ELL ++EEFG S GR I+LPC A + + R
Sbjct: 61 YLGTAVFSELLRMSQEEFGFSIDGR-IMLPCDAAVMEYAMCLLR 103
>Os09g0547100 Similar to Auxin induced protein
Length = 150
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 14/114 (12%)
Query: 1 MVSSLRLAEISRKW---SGSGSSKVT-SPTAAA---------AACPRGHFAAYTRDGSRF 47
M+S+ R+A++++KW + G ++T S TA A A +GH A YT DG+RF
Sbjct: 3 MISAKRIAQLAKKWRRMAALGRKRLTMSSTAMATEEAQGCSTAVAGKGHCAIYTADGARF 62
Query: 48 FVPIACLASDTFRELLSTAEEEFGSPGGRPIVLPCSADRLHQILAAF-RSASGK 100
VP+A L + ELL+ + EE+G G I LPC A + +L R+AS +
Sbjct: 63 EVPLAYLGTAVLGELLTMSREEYGFSGDGKITLPCDAMVMEYVLCLLGRNASAE 116
>Os09g0546100 Auxin responsive SAUR protein family protein
Length = 141
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 1 MVSSLRLAEISRKWSGSGS---SKVTSPTAAAAAC-----PRGHFAAYTRDGSRFFVPIA 52
M+S+ RLA++++KW + ++T C +GH YT DGSRF VP+A
Sbjct: 1 MISARRLAQLAKKWQRMAALERKRLTMKAKENEECCTSVAGKGHCVMYTADGSRFEVPLA 60
Query: 53 CLASDTFRELLSTAEEEFGSPGGRPIVLPCSA 84
L + F ELL ++EEFG I+LPC A
Sbjct: 61 YLGTAVFSELLRMSQEEFGFTSDGRIMLPCDA 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.130 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,099,112
Number of extensions: 169870
Number of successful extensions: 745
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 748
Number of HSP's successfully gapped: 8
Length of query: 120
Length of database: 17,035,801
Length adjustment: 86
Effective length of query: 34
Effective length of database: 12,545,397
Effective search space: 426543498
Effective search space used: 426543498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)