Os07g0475700 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0475700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Auxin responsive SAUR protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.18	(0.0562)	R²	:	0.608
β₁	:	-3.84	(0.206)	R²_dD	:	0.307	R²_D	:	0.225
β₂	:	0.919	(0.214)	R²_dC	:	0.0354	R²_C	:	0.109
β₃	:	1.72	(0.206)	R²_dE	:	0.141	R²_E	:	0.192
β₄	:	-6.08	(0.661)	R²_dD*C	:	0.0698	R²_D*C	:	0.0392
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.873	(0.12)	R²_dN8	:	0.0639	R²_N8	:	-0.0052
σ	:	1.06
deviance	:	511.42
__

_____

C
peak time of C	:	4.96
E
wheather	:	humidity
threshold	:	54.64
memory length	:	78
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	3.03
open length of G	:	6.32

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
499.93	1.05	4.2	-3.98	0.821	1.93	-4.33	-2.24	-0.93	4.39	54.77	77	3.04	6.17
511.42	1.06	4.18	-3.84	0.919	1.72	-6.08	--	-0.873	4.96	54.64	78	3.03	6.32
530.58	1.07	4.22	-4.09	0.736	1.98	--	-4.56	-1.03	3.21	42.42	48	3.32	6.27
594.79	1.14	4.19	-3.86	0.757	1.9	--	--	-0.906	3.74	44.72	84	3.03	6.12
548.9	1.09	4.21	-4.08	--	2.25	--	-4.66	-0.914	--	34.84	48	3.16	6.37
595.49	1.14	4.15	-3.72	2.26	--	-5.64	--	-0.876	5.23	--	--	--	--
675.21	1.22	4.14	-3.73	2.22	--	--	--	-0.849	5.33	--	--	--	--
615.28	1.16	4.19	-3.81	--	2.29	--	--	-0.897	--	42.05	79	3.01	6.12
977.46	1.46	4.1	--	0.763	1.79	--	--	-0.489	3.59	40.19	79	3.13	6.17
932.83	1.43	4.17	-3.65	--	--	--	--	-0.794	--	--	--	--	--
1041.14	1.51	4.04	--	2.16	--	--	--	-0.434	5.39	--	--	--	--
997.59	1.47	4.09	--	--	2.1	--	--	-0.459	--	29.13	76	3.01	6.2
1284.25	1.67	4.07	--	--	--	--	--	-0.389	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	501.48	humidity	60.0	90	> th	dose dependent	rect.	3	6
3	503.42	temperature	15.0	30	> th	dose independent	rect.	9	18
5	504.45	temperature	10.0	270	> th	dose dependent	rect.	19	7
7	506.27	temperature	30.0	90	< th	dose dependent	rect.	3	6
8	506.67	temperature	10.0	90	> th	dose dependent	rect.	21	6
9	506.95	temperature	25.0	90	< th	dose independent	rect.	3	6
11	507.11	temperature	15.0	90	> th	dose independent	rect.	19	8
13	507.54	radiation	40.0	90	< th	dose dependent	rect.	3	6
20	509.84	temperature	25.0	270	< th	dose independent	rect.	1	5
23	510.38	wind	9.0	90	< th	dose independent	rect.	9	18
24	510.43	wind	9.0	10	< th	dose dependent	rect.	3	6
27	510.72	temperature	15.0	270	> th	dose dependent	rect.	22	2
33	511.35	precipitation	0.1	90	< th	dose independent	rect.	3	6
34	511.35	precipitation	0.1	90	< th	dose dependent	rect.	3	6
36	511.61	radiation	30.0	90	< th	dose independent	rect.	3	6
41	511.85	temperature	20.0	90	> th	dose independent	rect.	21	6
42	511.90	wind	9.0	90	< th	dose independent	rect.	3	6
43	511.90	temperature	10.0	90	> th	dose independent	rect.	3	6
45	511.90	humidity	50.0	90	> th	dose independent	rect.	3	6
46	511.90	atmosphere	995.0	90	> th	dose independent	rect.	3	6
47	511.90	atmosphere	1015.0	90	< th	dose independent	rect.	3	6
54	512.39	temperature	15.0	10	> th	dose dependent	rect.	23	4
58	512.61	temperature	25.0	270	< th	dose independent	rect.	24	8
59	512.62	atmosphere	995.0	90	> th	dose independent	rect.	9	18
61	512.66	precipitation	0.1	90	< th	dose independent	rect.	9	18
62	512.66	precipitation	0.1	90	< th	dose dependent	rect.	9	18
77	513.35	precipitation	0.1	10	< th	dose independent	rect.	9	18
78	513.35	precipitation	0.1	10	< th	dose dependent	rect.	9	18
96	513.91	precipitation	0.1	90	< th	dose independent	rect.	3	16
97	513.91	precipitation	0.1	90	< th	dose dependent	rect.	3	16
103	514.23	precipitation	0.1	90	< th	dose independent	rect.	19	8
104	514.23	precipitation	0.1	90	< th	dose dependent	rect.	19	8
113	514.64	temperature	30.0	90	< th	dose independent	rect.	19	8
114	514.64	humidity	50.0	90	> th	dose independent	rect.	19	8
116	514.64	atmosphere	995.0	90	> th	dose independent	rect.	19	8
117	514.64	radiation	1.0	90	< th	dose independent	rect.	19	8
122	514.64	temperature	10.0	90	> th	dose independent	rect.	3	16
123	514.64	atmosphere	1015.0	90	< th	dose independent	rect.	3	16
124	514.64	radiation	1.0	90	< th	dose dependent	rect.	19	8
142	514.89	radiation	40.0	10	< th	dose dependent	rect.	3	6
153	515.17	wind	9.0	90	< th	dose independent	rect.	19	8
157	515.42	humidity	50.0	10	> th	dose independent	rect.	9	18
161	515.58	humidity	50.0	90	> th	dose independent	rect.	9	18
166	515.70	temperature	10.0	270	> th	dose dependent	rect.	20	15
168	515.76	temperature	20.0	270	> th	dose independent	rect.	22	2
188	516.91	radiation	1.0	270	< th	dose independent	rect.	2	5
202	517.79	wind	3.0	30	< th	dose dependent	rect.	22	5
204	517.84	wind	1.0	270	> th	dose independent	rect.	3	1
224	518.62	atmosphere	995.0	30	> th	dose dependent	rect.	3	6
226	518.79	wind	3.0	90	< th	dose dependent	rect.	9	18
233	518.96	wind	9.0	90	< th	dose independent	rect.	3	16
236	519.14	atmosphere	995.0	90	> th	dose independent	rect.	3	16
249	519.56	temperature	30.0	270	< th	dose dependent	rect.	1	5
250	519.58	radiation	1.0	270	< th	dose dependent	rect.	2	5
259	519.92	wind	1.0	270	> th	dose independent	rect.	14	15
265	520.09	temperature	30.0	270	< th	dose dependent	rect.	3	1
274	520.43	wind	9.0	90	< th	dose dependent	rect.	19	8
298	521.02	wind	3.0	90	< th	dose dependent	rect.	7	20
299	521.04	temperature	10.0	1440	> th	dose independent	rect.	4	6
302	521.04	atmosphere	995.0	1440	> th	dose independent	rect.	4	6
303	521.04	atmosphere	1015.0	1440	< th	dose independent	rect.	4	6
304	521.04	temperature	10.0	1440	> th	dose independent	rect.	10	18
310	521.12	wind	9.0	90	< th	dose dependent	rect.	9	18
328	521.73	wind	1.0	270	> th	dose independent	rect.	1	5
344	522.07	wind	1.0	90	< th	dose independent	rect.	7	20
382	522.68	humidity	50.0	90	> th	dose dependent	rect.	19	8
397	523.21	precipitation	0.1	270	< th	dose independent	rect.	3	1
398	523.21	precipitation	0.1	270	< th	dose dependent	rect.	3	1
416	523.81	humidity	50.0	4320	> th	dose independent	rect.	4	6
448	524.50	humidity	50.0	270	> th	dose dependent	rect.	3	2
478	524.78	wind	7.0	270	< th	dose independent	rect.	3	1
497	524.97	temperature	10.0	270	> th	dose independent	rect.	3	1
500	524.97	humidity	50.0	270	> th	dose independent	rect.	3	1
503	524.97	atmosphere	995.0	270	> th	dose independent	rect.	3	1
504	524.97	atmosphere	1010.0	270	< th	dose independent	rect.	3	1
506	524.97	radiation	1.0	270	< th	dose independent	rect.	3	1
511	524.97	temperature	10.0	270	> th	dose independent	rect.	4	23
528	525.18	radiation	20.0	270	< th	dose dependent	rect.	1	6
533	525.34	wind	1.0	270	> th	dose independent	rect.	1	17
608	526.24	radiation	1.0	90	< th	dose dependent	rect.	8	19
616	526.38	wind	7.0	270	< th	dose independent	rect.	1	5
657	526.68	precipitation	0.1	270	< th	dose independent	rect.	1	5
659	526.68	precipitation	0.1	270	< th	dose dependent	rect.	1	5
672	526.82	wind	9.0	270	< th	dose independent	rect.	5	22
711	527.08	temperature	10.0	270	> th	dose independent	rect.	1	5
714	527.08	humidity	50.0	270	> th	dose independent	rect.	1	5
717	527.08	atmosphere	995.0	270	> th	dose independent	rect.	1	5
718	527.08	atmosphere	1015.0	270	< th	dose independent	rect.	1	5
719	527.08	radiation	20.0	270	< th	dose independent	rect.	1	5
756	527.39	precipitation	0.1	270	< th	dose independent	rect.	5	22
759	527.39	precipitation	0.1	270	< th	dose dependent	rect.	5	22
765	527.43	humidity	50.0	90	> th	dose independent	rect.	3	16
768	527.45	atmosphere	1015.0	30	< th	dose independent	rect.	9	18
788	527.58	radiation	1.0	90	< th	dose dependent	rect.	13	14
852	527.98	radiation	40.0	90	< th	dose dependent	rect.	11	16
978	528.60	humidity	50.0	270	> th	dose independent	rect.	6	8
991	528.74	wind	3.0	30	< th	dose dependent	rect.	16	11