BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0448400 Os07g0448400|AK107700
(71 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0448200 Similar to Plasma membrane intrinsic protein (... 144 2e-35
Os07g0448400 Similar to Plasma membrane integral protein Zm... 144 2e-35
Os07g0448100 Similar to Plasma membrane integral protein Zm... 142 7e-35
Os02g0629200 Similar to HvPIP2 122 4e-29
Os07g0448800 Aquaporin 117 2e-27
AK105524 117 2e-27
Os04g0233400 Similar to Arabidopsis thaliana (Fragment) 112 7e-26
Os04g0521100 Major intrinsic protein family protein 112 8e-26
Os02g0666200 Aquaporin 106 4e-24
Os10g0481100 Similar to Arabidopsis thaliana (Fragment) 106 5e-24
Os02g0823100 Similar to Plasma membrane intrinsic protein (... 103 2e-23
Os09g0541000 Similar to Plasma membrane intrinsic protein (... 102 5e-23
Os03g0861300 Similar to Aquaporin 85 1e-17
>Os07g0448200 Similar to Plasma membrane intrinsic protein (Aquaporin)
Length = 223
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/71 (94%), Positives = 71/71 (100%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS 60
MVHLATIP+TGTGINPARSLGAAV+YNNSKAWSDQWIFWVGPFIGAAIAALYHQ++LRAS
Sbjct: 153 MVHLATIPITGTGINPARSLGAAVMYNNSKAWSDQWIFWVGPFIGAAIAALYHQVILRAS 212
Query: 61 ARGYGSFRSNA 71
ARGYGSFRSNA
Sbjct: 213 ARGYGSFRSNA 223
>Os07g0448400 Similar to Plasma membrane integral protein ZmPIP2-6
Length = 71
Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS 60
MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS
Sbjct: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS 60
Query: 61 ARGYGSFRSNA 71
ARGYGSFRSNA
Sbjct: 61 ARGYGSFRSNA 71
>Os07g0448100 Similar to Plasma membrane integral protein ZmPIP2-6
Length = 286
Score = 142 bits (357), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/71 (92%), Positives = 70/71 (98%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS 60
MVHLATIP+TGTGINPARSLG AVVYNN+KAWSDQWIFWVGPFIGAAIAALYHQ++LRAS
Sbjct: 216 MVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRAS 275
Query: 61 ARGYGSFRSNA 71
ARGYGSFRSNA
Sbjct: 276 ARGYGSFRSNA 286
>Os02g0629200 Similar to HvPIP2
Length = 288
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 61/71 (85%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS 60
MVHLATIP+TGTGINPARSLG AV+YN KAW DQWIFWVGP IGAAIAA YHQ VLRAS
Sbjct: 218 MVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRAS 277
Query: 61 ARGYGSFRSNA 71
A GS+RSNA
Sbjct: 278 AAKLGSYRSNA 288
>Os07g0448800 Aquaporin
Length = 290
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 63/72 (87%), Gaps = 1/72 (1%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS 60
MVHLATIP+TGTGINPARS+GAAV++NN KAW + WIFWVGPF+GAAIAA YHQ +LRA
Sbjct: 219 MVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAG 278
Query: 61 A-RGYGSFRSNA 71
A + GSFRSNA
Sbjct: 279 AIKALGSFRSNA 290
>AK105524
Length = 190
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 63/72 (87%), Gaps = 1/72 (1%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS 60
MVHLATIP+TGTGINPARS+GAAV++NN KAW + WIFWVGPF+GAAIAA YHQ +LRA
Sbjct: 119 MVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAG 178
Query: 61 A-RGYGSFRSNA 71
A + GSFRSNA
Sbjct: 179 AIKALGSFRSNA 190
>Os04g0233400 Similar to Arabidopsis thaliana (Fragment)
Length = 282
Score = 112 bits (280), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS 60
MVHLATIP+TGTGINPARS+GAAV+YN KAW D WIFW GPFIGA AA YHQ +LRA+
Sbjct: 209 MVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAA 268
Query: 61 A-RGYGSFRSN 70
A + GSFRSN
Sbjct: 269 AIKALGSFRSN 279
>Os04g0521100 Major intrinsic protein family protein
Length = 290
Score = 112 bits (279), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 57/69 (82%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS 60
MVHLATIP+TGTGINPARSLGAAV+YN KAW D WIFWVGP IGAAIAA YHQ VLRAS
Sbjct: 219 MVHLATIPITGTGINPARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRAS 278
Query: 61 ARGYGSFRS 69
A GS S
Sbjct: 279 AAKLGSSSS 287
>Os02g0666200 Aquaporin
Length = 289
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 55/59 (93%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRA 59
+VHLATIP+TGTGINPARSLGAA++YN AW+D WIFWVGPF+GAA+AA+YHQ+++RA
Sbjct: 224 LVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRA 282
>Os10g0481100 Similar to Arabidopsis thaliana (Fragment)
Length = 186
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 57/69 (82%), Gaps = 1/69 (1%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRAS 60
+VHLATIP+TGTGINPARS GAAVVYN AW DQWIFWVGP +G+AIA LYH+ VLRAS
Sbjct: 114 VVHLATIPITGTGINPARSFGAAVVYNQPNAWHDQWIFWVGPLVGSAIATLYHEHVLRAS 173
Query: 61 A-RGYGSFR 68
+ GSF+
Sbjct: 174 TLKALGSFK 182
>Os02g0823100 Similar to Plasma membrane intrinsic protein (Plasma membrane
integral protein ZmPIP1-5)
Length = 288
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 54/59 (91%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRA 59
+VHLATIP+TGTGINPARSLGAA+VYN + AW D WIFWVGPFIGAA+AA+YH +V+RA
Sbjct: 223 LVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRA 281
>Os09g0541000 Similar to Plasma membrane intrinsic protein (Aquaporin)
Length = 257
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRA- 59
+VHLATIP+TGTGINPARSLGAAV+YN AW D WIFWVGP IGA +AA YH++VLR
Sbjct: 183 VVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGE 242
Query: 60 SARGYGSFRSNA 71
+A+ SFRS +
Sbjct: 243 AAKALSSFRSTS 254
>Os03g0861300 Similar to Aquaporin
Length = 280
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 1 MVHLATIPVTGTGINPARSLGAAVVYN--NSKAWSDQWIFWVGPFIGAAIAALYHQIVLR 58
+VHLATIP+TGTGINPARSLG A+V +KAWS WIFWVGPF GAA A +YH +LR
Sbjct: 204 VVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILR 263
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,512,782
Number of extensions: 82047
Number of successful extensions: 265
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 13
Length of query: 71
Length of database: 17,035,801
Length adjustment: 42
Effective length of query: 29
Effective length of database: 14,842,813
Effective search space: 430441577
Effective search space used: 430441577
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 149 (62.0 bits)