Os04g0233400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Arabidopsis thaliana (Fragment).
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Os04g0233400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Arabidopsis thaliana (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 387 | 0.924 | 10.5 | -5.57 | 0.305 | 2.91 | 1.34 | -3.82 | 0.262 | 13 | 25.92 | 1208 | 7.85 | -- |
| 389.96 | 0.92 | 10.4 | -4.78 | 0.291 | 2.53 | 1.5 | -- | 0.413 | 13.2 | 25.9 | 1210 | 7.72 | -- |
| 394.25 | 0.925 | 10.5 | -5.74 | 0.292 | 2.99 | -- | -4.83 | 0.234 | 13 | 25.97 | 1207 | 7.71 | -- |
| 398.53 | 0.93 | 10.4 | -4.71 | 0.294 | 2.54 | -- | -- | 0.395 | 13.9 | 25.73 | 1220 | 7.69 | -- |
| 398.24 | 0.929 | 10.5 | -5.64 | -- | 2.84 | -- | -4.49 | 0.306 | -- | 26.15 | 1238 | 7.42 | -- |
| 616.41 | 1.16 | 10.4 | -4.08 | 0.174 | -- | 1.2 | -- | 0.45 | 8.18 | -- | -- | -- | -- |
| 617.9 | 1.16 | 10.4 | -4.06 | 0.294 | -- | -- | -- | 0.444 | 4.91 | -- | -- | -- | -- |
| 402.2 | 0.934 | 10.4 | -4.72 | -- | 2.4 | -- | -- | 0.41 | -- | 25.92 | 1263 | 7.88 | -- |
| 949.28 | 1.43 | 10.3 | -- | 0.191 | 1.7 | -- | -- | 1.03 | 13.6 | 26.5 | 1170 | 6.12 | -- |
| 622.47 | 1.17 | 10.4 | -4.05 | -- | -- | -- | -- | 0.451 | -- | -- | -- | -- | -- |
| 1052 | 1.52 | 10.3 | -- | 0.224 | -- | -- | -- | 0.896 | 5.49 | -- | -- | -- | -- |
| 951.14 | 1.44 | 10.3 | -- | -- | 1.65 | -- | -- | 1.04 | -- | 26.6 | 1189 | 6.04 | -- |
| 1054.61 | 1.52 | 10.3 | -- | -- | -- | -- | -- | 0.901 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 401.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 5 | 402.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 10 | 402.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 28 | 402.91 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 43 | 403.67 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 52 | 404.15 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 57 | 404.22 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 69 | 404.76 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 84 | 405.05 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 149 | 407.65 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 205 | 411.40 | temperature | 30 | 1440 | < th | dose independent | sin | 16 | NA |
| 207 | 411.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 208 | 411.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 217 | 411.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 221 | 411.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 274 | 412.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 22 |
| 291 | 412.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 22 |
| 304 | 412.58 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 370 | 413.35 | temperature | 30 | 1440 | > th | dose independent | sin | 15 | NA |
| 372 | 413.41 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 458 | 414.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 492 | 415.02 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 529 | 415.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 534 | 415.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 545 | 415.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 596 | 415.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 599 | 415.70 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 743 | 418.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 781 | 418.65 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 962 | 419.89 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 974 | 420.22 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 982 | 420.50 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 984 | 420.61 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 990 | 420.80 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |