Os07g0448400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plasma membrane integral protein ZmPIP2-6.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0448400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Plasma membrane integral protein ZmPIP2-6.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 541 | 1.09 | 4.37 | 1.56 | 2.98 | -3.86 | 5.02 | -1.24 | 0.662 | 10.3 | 20.6 | 6318 | -- | -- |
| 542.64 | 1.08 | 4.31 | 1.74 | 2.98 | -3.63 | 5.05 | -- | 0.712 | 10.3 | 20.59 | 6313 | -- | -- |
| 640.42 | 1.18 | 4.37 | 1.73 | 2.98 | -4 | -- | -1.57 | 0.657 | 10.1 | 20.4 | 6248 | -- | -- |
| 642.8 | 1.18 | 4.31 | 1.94 | 2.97 | -3.64 | -- | -- | 0.703 | 10.1 | 20.6 | 6218 | -- | -- |
| 1162.43 | 1.59 | 4.45 | 1.68 | -- | -4.18 | -- | -2.1 | 0.737 | -- | 20.9 | 6593 | -- | -- |
| 783.37 | 1.31 | 4.57 | -0.785 | 3.05 | -- | 5.18 | -- | -0.44 | 10.4 | -- | -- | -- | -- |
| 890.18 | 1.4 | 4.56 | -0.586 | 3.05 | -- | -- | -- | -0.431 | 10.1 | -- | -- | -- | -- |
| 1167.16 | 1.59 | 4.36 | 2.02 | -- | -3.8 | -- | -- | 0.83 | -- | 20.95 | 6560 | -- | -- |
| 689.48 | 1.22 | 4.37 | -- | 2.95 | -2.43 | -- | -- | 0.421 | 10.1 | 22.2 | 5132 | -- | -- |
| 1452 | 1.78 | 4.64 | -0.627 | -- | -- | -- | -- | -0.436 | -- | -- | -- | -- | -- |
| 899.22 | 1.4 | 4.55 | -- | 3.05 | -- | -- | -- | -0.366 | 10.1 | -- | -- | -- | -- |
| 996.62 | 1.47 | 4.5 | -- | -- | -2.24 | -- | -- | 0.288 | -- | 25 | 733 | -- | -- |
| 1462.38 | 1.78 | 4.63 | -- | -- | -- | -- | -- | -0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 537.22 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 8 | 538.73 | temperature | 20 | 14400 | < th | dose dependent | sin | 18 | NA |
| 12 | 539.26 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 13 |
| 26 | 540.12 | temperature | 20 | 14400 | < th | dose dependent | sin | 0 | NA |
| 111 | 544.14 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 116 | 544.41 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 121 | 544.54 | temperature | 20 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 127 | 544.68 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 201 | 546.81 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 241 | 548.47 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 307 | 551.62 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 319 | 552.07 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 364 | 553.78 | temperature | 20 | 14400 | < th | dose independent | sin | 1 | NA |
| 376 | 554.22 | temperature | 20 | 14400 | > th | dose independent | sin | 1 | NA |
| 484 | 557.37 | temperature | 15 | 14400 | > th | dose independent | rect. | 15 | 20 |
| 495 | 557.64 | temperature | 15 | 14400 | > th | dose independent | sin | 11 | NA |
| 499 | 557.66 | temperature | 15 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 502 | 557.69 | temperature | 20 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 507 | 557.73 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 519 | 557.83 | temperature | 15 | 14400 | > th | dose independent | rect. | 15 | 15 |
| 522 | 557.90 | humidity | 80 | 10 | > th | dose dependent | sin | 3 | NA |
| 534 | 558.00 | temperature | 15 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 537 | 558.02 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 546 | 558.10 | temperature | 15 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 564 | 558.24 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 586 | 558.37 | temperature | 15 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 590 | 558.39 | temperature | 20 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 654 | 558.75 | temperature | 15 | 14400 | > th | dose independent | no | NA | NA |
| 660 | 558.78 | temperature | 15 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 687 | 558.97 | temperature | 15 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 719 | 559.19 | temperature | 15 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 734 | 559.28 | temperature | 15 | 14400 | < th | dose independent | sin | 8 | NA |
| 748 | 559.36 | temperature | 15 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 755 | 559.43 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 763 | 559.49 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 768 | 559.54 | temperature | 15 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 803 | 559.91 | temperature | 15 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 904 | 560.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 8 |