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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0448100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Plasma membrane integral protein ZmPIP2-6.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.72 (0.0619) R2 : 0.865
β1 : 0.0687 (0.228) R2dD : 5.4e-05 R2D : 0.000152
β2 : 7.01 (0.169) R2dC : 0.651 R2C : 0.788
β3 : 1.36 (0.131) R2dE : 0.0431 R2E : 0.192
β4 : 4.6 (0.598) R2dD*C : 0.0176 R2D*C : 0.0178
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.82 (0.132) R2dN8 : 0.0153 R2N8 : 0.00471
σ : 1.15
deviance : 613.41
__
_____
C
peak time of C : 9.73
E
wheather : humidity
threshold : 87.06
memory length : 70
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.4
open length of G : 18.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
608.99 1.16 7.7 0.0917 7.04 1.35 5.25 -1.02 -0.797 9.75 87.03 67 21.3 18.7
613.41 1.15 7.72 0.0687 7.01 1.36 4.6 -- -0.82 9.73 87.06 70 21.4 18.7
681.91 1.22 7.7 0.286 6.93 1.5 -- 1.22 -0.753 9.71 87.99 68 21.6 18.4
689.78 1.22 7.71 0.302 6.9 1.51 -- -- -0.79 9.67 87.72 75 21.3 18.7
2095.58 2.13 7.78 0.337 -- 4.65 -- 2.84 -0.567 -- 84.12 13 22.1 18.7
753.81 1.29 7.67 -0.116 7.8 -- 5.14 -- -0.699 9.96 -- -- -- --
856.5 1.37 7.67 0.0824 7.78 -- -- -- -0.689 9.94 -- -- -- --
863.83 1.37 7.89 0.0483 -- 7.02 -- -- -0.79 -- 139.9 409 0.533 11.9
692.1 1.23 7.72 -- 6.92 1.49 -- -- -0.819 9.67 87.76 75 21.3 18.8
4489.17 3.13 7.88 -0.00785 -- -- -- -- -0.691 -- -- -- -- --
856.67 1.37 7.67 -- 7.78 -- -- -- -0.699 9.94 -- -- -- --
861.62 1.37 7.88 -- -- 6.87 -- -- -0.718 -- 162.4 404 0.657 11.9
4489.17 3.13 7.88 -- -- -- -- -- -0.69 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 620.39 humidity 90.0 90 < th dose independent rect. 21 19
29 634.83 humidity 80.0 90 > th dose dependent sin 0 NA
39 636.74 humidity 90.0 90 < th dose independent rect. 1 15
45 638.87 radiation 20.0 90 < th dose dependent sin 23 NA
46 638.89 radiation 10.0 270 > th dose independent rect. 6 9
61 639.36 humidity 50.0 10 > th dose dependent rect. 16 18
64 639.77 radiation 10.0 270 > th dose independent rect. 8 6
86 640.86 temperature 30.0 270 < th dose dependent rect. 19 8
99 642.00 temperature 30.0 10 < th dose dependent rect. 20 9
105 642.74 humidity 70.0 10 > th dose dependent rect. 5 15
111 643.38 radiation 10.0 90 < th dose dependent rect. 5 14
132 645.45 humidity 90.0 90 < th dose independent rect. 3 13
135 645.69 radiation 10.0 90 > th dose independent sin 23 NA
141 645.98 temperature 15.0 270 > th dose independent rect. 20 18
143 646.06 humidity 90.0 10 < th dose dependent rect. 21 19
146 646.42 temperature 15.0 270 > th dose independent rect. 19 20
147 646.54 humidity 90.0 90 < th dose independent rect. 9 7
182 648.22 humidity 80.0 270 > th dose dependent rect. 23 22
188 648.56 radiation 40.0 90 < th dose dependent rect. 15 20
201 649.19 humidity 90.0 90 < th dose independent sin 0 NA
202 649.21 radiation 20.0 90 < th dose dependent rect. 7 13
214 649.77 humidity 80.0 270 > th dose dependent rect. 1 20
219 649.89 radiation 30.0 90 < th dose dependent rect. 13 22
268 651.74 humidity 90.0 90 > th dose independent sin 0 NA
293 652.54 radiation 1.0 90 < th dose independent rect. 5 14
308 652.97 radiation 10.0 90 > th dose independent rect. 8 23
325 653.45 humidity 80.0 10 < th dose independent rect. 8 8
333 653.70 radiation 10.0 270 > th dose independent sin 3 NA
402 655.15 humidity 80.0 270 > th dose dependent rect. 9 23
417 655.54 temperature 15.0 270 > th dose independent rect. 19 8
426 655.73 humidity 80.0 90 > th dose dependent rect. 4 23
431 655.82 humidity 80.0 90 > th dose dependent rect. 13 23
432 655.86 humidity 80.0 90 > th dose dependent no NA NA
437 655.93 humidity 80.0 90 > th dose dependent rect. 4 19
457 656.40 humidity 90.0 90 < th dose independent rect. 5 11
460 656.49 temperature 25.0 270 < th dose independent rect. 20 6
461 656.49 radiation 20.0 90 < th dose independent rect. 4 16
463 656.56 humidity 90.0 90 > th dose independent rect. 5 14
472 656.75 radiation 30.0 43200 < th dose independent rect. 17 5
483 657.05 humidity 80.0 90 > th dose dependent rect. 15 23
510 657.54 humidity 70.0 10 > th dose dependent rect. 7 13
519 657.79 humidity 80.0 90 > th dose dependent rect. 17 23
562 658.24 humidity 90.0 90 < th dose independent rect. 8 23
575 658.38 temperature 15.0 270 > th dose independent rect. 9 16
592 658.66 temperature 20.0 270 > th dose independent rect. 8 6
593 658.68 humidity 90.0 90 > th dose independent rect. 5 16
632 659.33 wind 7.0 1440 < th dose independent rect. 5 4
650 659.40 temperature 20.0 90 > th dose independent rect. 16 17
708 660.18 temperature 20.0 270 > th dose independent rect. 14 17
751 660.67 radiation 10.0 90 < th dose independent sin 23 NA
796 661.30 radiation 10.0 90 < th dose independent rect. 7 13
855 661.90 humidity 90.0 10 < th dose dependent rect. 1 15
880 662.09 humidity 90.0 90 > th dose independent rect. 5 18
885 662.12 temperature 10.0 270 > th dose dependent rect. 15 16
912 662.43 humidity 70.0 10 > th dose dependent rect. 23 23
959 662.85 radiation 30.0 90 < th dose dependent no NA NA
971 662.96 humidity 80.0 10 > th dose independent rect. 5 15
993 663.28 precipitation 0.1 270 < th dose independent rect. 17 23
995 663.28 precipitation 0.1 270 < th dose dependent rect. 17 23
997 663.31 humidity 90.0 90 > th dose independent rect. 4 23