BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0409100 Os07g0409100|AK060230
(515 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0409100 Similar to CLB1 864 0.0
Os03g0251600 556 e-158
Os08g0300200 C2 domain containing protein 283 2e-76
Os09g0538800 Similar to Synaptotagmin C 217 2e-56
Os02g0448400 Similar to Synaptotagmin C 214 1e-55
Os01g0819200 C2 calcium/lipid-binding region, CaLB domain c... 122 6e-28
Os01g0242600 C2 calcium/lipid-binding region, CaLB domain c... 81 2e-15
Os02g0313700 Similar to Synaptotagmin C (Synaptic vesicle p... 73 6e-13
>Os07g0409100 Similar to CLB1
Length = 515
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/515 (85%), Positives = 440/515 (85%)
Query: 1 MGLISXXXXXXXXXXXXXXXWSRVMQRRSRKRIAKAADIKVLGSLGRDDLKKLCGDNFPE 60
MGLIS WSRVMQRRSRKRIAKAADIKVLGSLGRDDLKKLCGDNFPE
Sbjct: 1 MGLISGMVMGMVVGVALMAGWSRVMQRRSRKRIAKAADIKVLGSLGRDDLKKLCGDNFPE 60
Query: 61 WISFPQYEQVKWLNKHLSKLWPFVDQAATAVVKESVEPLLDDYRPPGIKSLKFSKFSLGT 120
WISFPQYEQVKWLNKHLSKLWPFVDQAATAVVKESVEPLLDDYRPPGIKSLKFSKFSLGT
Sbjct: 61 WISFPQYEQVKWLNKHLSKLWPFVDQAATAVVKESVEPLLDDYRPPGIKSLKFSKFSLGT 120
Query: 121 VSPKIEGIRIQNIQPGQIIMDIDLRWGGDPSIILAVDAVVASLPIQLKDLQVYTIVRVVF 180
VSPKIEGIRIQNIQPGQIIMDIDLRWGGDPSIILAVDAVVASLPIQLKDLQVYTIVRVVF
Sbjct: 121 VSPKIEGIRIQNIQPGQIIMDIDLRWGGDPSIILAVDAVVASLPIQLKDLQVYTIVRVVF 180
Query: 181 QLSEEIPCISAVVVALLAEPEPKIQYTLKAIGGSLTAVPGLSDMIDDTVNSIVSDMLKWP 240
QLSEEIPCISAVVVALLAEPEPKIQYTLKAIGGSLTAVPGLSDMIDDTVNSIVSDMLKWP
Sbjct: 181 QLSEEIPCISAVVVALLAEPEPKIQYTLKAIGGSLTAVPGLSDMIDDTVNSIVSDMLKWP 240
Query: 241 HRLVVPLGVNVDTSELELKPQGRLTVTVVKATSLKNKELIGKSDPYVILYVRPMFKVKTK 300
HRLVVPLGVNVDTSELELKPQGRLTVTVVKATSLKNKELIGKSDPYVILYVRPMFKVKTK
Sbjct: 241 HRLVVPLGVNVDTSELELKPQGRLTVTVVKATSLKNKELIGKSDPYVILYVRPMFKVKTK 300
Query: 301 VIDDNLNPEWNETFPLIVEDKETQSVIFEVYDEDRLQQDKKLGVAKLAVNSLQPEATSEI 360
VIDDNLNPEWNETFPLIVEDKETQSVIFEVYDEDRLQQDKKLGVAKLAVNSLQPEATSEI
Sbjct: 301 VIDDNLNPEWNETFPLIVEDKETQSVIFEVYDEDRLQQDKKLGVAKLAVNSLQPEATSEI 360
Query: 361 TLKLQQSLDSLKIKDTKDRGTLHLQVTYHPFSKEEQMEALESEKRAIEERKRLKEAGVIG 420
TLKLQQSLDSLKIKDTKDRGTLHLQVTYHPFSKEEQMEALESEKRAIEERKRLKEAGVIG
Sbjct: 361 TLKLQQSLDSLKIKDTKDRGTLHLQVTYHPFSKEEQMEALESEKRAIEERKRLKEAGVIG 420
Query: 421 STMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
STMD
Sbjct: 421 STMDALGGAASLVGSGVGLVGTGIVGGVGLVGSGIGAGVGLVGSGVGLVGSGIGAVGSGL 480
Query: 481 XXXXKFMGKTVAGPFSMSRKNGSSSTAPQAEQPSA 515
KFMGKTVAGPFSMSRKNGSSSTAPQAEQPSA
Sbjct: 481 GKAGKFMGKTVAGPFSMSRKNGSSSTAPQAEQPSA 515
>Os03g0251600
Length = 566
Score = 556 bits (1432), Expect = e-158, Method: Compositional matrix adjust.
Identities = 280/428 (65%), Positives = 337/428 (78%), Gaps = 40/428 (9%)
Query: 28 RSRKRIA---------KAADIKVLGSLGRDDLKKLCGDNFPEWISFPQYEQVKWLNKHLS 78
RS K IA AAD+ L SL R+D+KK+CG+N PEW+SFP+YEQVKWLNK LS
Sbjct: 43 RSHKFIACDARLDFESSAADVNALASLDREDVKKICGENLPEWVSFPEYEQVKWLNKQLS 102
Query: 79 KLWPFVDQAATAVVKESVEPLLDDYRPPGIKSLKFSKFSLGTVSPKIEGIRIQNIQPGQI 138
KLWPFV++AAT V+++SVEP+LDDYRP GI SLKFSK SLGTV PKIEGIRIQ+ + GQI
Sbjct: 103 KLWPFVEEAATMVIRDSVEPILDDYRPAGISSLKFSKLSLGTVPPKIEGIRIQSFKKGQI 162
Query: 139 IMDIDLRWGGDPSIILAVDAVVASLPIQLKDLQVYTIVRVVFQLSEEIPCISAVVVALLA 198
MD+D RWGGDP+I+LAVD +VASLPIQ K+LQVYTI+RVVFQL +EIPCISAVVVALLA
Sbjct: 163 TMDVDFRWGGDPNIVLAVDTLVASLPIQFKNLQVYTIIRVVFQLCDEIPCISAVVVALLA 222
Query: 199 EPEPKIQYTLKAIGGSLTAVPGLSDMIDDTVNSIVSDMLKWPHRLVVPL-GVNVDTSELE 257
EP+P+I Y LKA+GGSLTA+PGLSDMIDDTV S+++DML+WPHR+VVPL GV+VD S+LE
Sbjct: 223 EPKPRIDYILKAVGGSLTAMPGLSDMIDDTVASLIADMLQWPHRIVVPLGGVDVDVSDLE 282
Query: 258 LKPQGRLTVTVVKATSLKNKELIGKSDPYVILYVRPMFKVKTKVIDDNLNPEWNETFPLI 317
LKP G+LTVTVV+A SLKNKELIGKSDPYV+LY+RPMFK KT VIDDNLNPEWNETF LI
Sbjct: 283 LKPHGKLTVTVVRAESLKNKELIGKSDPYVVLYIRPMFKEKTSVIDDNLNPEWNETFSLI 342
Query: 318 VEDKETQSVIFEVYDEDRLQQDKKLGVAKLAVNSLQPEATSEITLKLQQSLDSLKIKDTK 377
EDKETQ +I +V+DED+L+QDK+LG+AKL +N L+ E+ EI L+L SLD+ K+KD K
Sbjct: 343 AEDKETQHLILQVFDEDKLKQDKRLGIAKLPLNDLEMESVQEINLQLLSSLDTTKVKDKK 402
Query: 378 DRGTLHL------------------------------QVTYHPFSKEEQMEALESEKRAI 407
DRG L + QV YHPF+K E +EALE EK+ +
Sbjct: 403 DRGVLTIKVSSCPHGGASWVLGTRDAKVFDADRRDNTQVLYHPFTKAEALEALELEKKTV 462
Query: 408 EERKRLKE 415
EER++ KE
Sbjct: 463 EERRKTKE 470
>Os08g0300200 C2 domain containing protein
Length = 501
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 241/380 (63%), Gaps = 25/380 (6%)
Query: 64 FPQYEQVKWLNKHLSKLWPFVDQAATAVVKESVEPLLDDYRPPGIKSLKFSKFSLGTVSP 123
F ++KWLN+ L K+WPFV++AA+ ++K SVEP+ + Y+ + SL FSK +LGTV+P
Sbjct: 4 FHSKAKLKWLNQELVKIWPFVNEAASELIKTSVEPIFEQYKSFILSSLHFSKLTLGTVAP 63
Query: 124 KIEGIRIQNIQPGQIIMDIDLRWGGDPSIILAVDAVVA-SLPIQLKDLQVYTIVRVVFQ- 181
+ G+ I + I M+++L+W G+P+I+L + + SLP+Q+K++ ++R+VF+
Sbjct: 64 QFTGVSILDSDSSGITMELELQWDGNPNIVLDIQTTLGISLPVQVKNIGFTGVLRLVFKP 123
Query: 182 LSEEIPCISAVVVALLAEPEPKIQYTLKAIGGSLTAVPGLSDMIDDTVNSIVSDMLKWPH 241
L E+PC AV +L + K+ +TLK IGG +TA+PG+SD I+ T+ + D L WP+
Sbjct: 124 LVAELPCFGAVCCSL--REKSKVDFTLKVIGGEMTAIPGISDAIEGTIRDTIEDQLTWPN 181
Query: 242 RLVVPLGVNVDTSELELKPQGRLTVTVVKATSLKNKELIGKSDPYVILYVRPMFK--VKT 299
R+VVP+ V D S+LELKP G L V +V+A L NK+L+GKSDP+ +LY+RP+ K+
Sbjct: 182 RIVVPI-VPGDYSDLELKPVGLLEVKLVEARDLTNKDLVGKSDPFAVLYIRPLQDKMKKS 240
Query: 300 KVIDDNLNPEWNETFPLIVEDKETQSVIFEVYDEDRLQQDKKLGVAKLAVNSLQPEATSE 359
K I+++LNP WNE + +VED TQ + ++YD++ LQ + +G A++ ++ LQP E
Sbjct: 241 KTINNDLNPIWNEHYEFVVEDTSTQRLTVKIYDDEGLQASELIGCARVDLSDLQPGKVKE 300
Query: 360 ITLKLQQSLDSLKIKDTKDRGTLHLQVTYHPFSKEE----------QMEAL------ESE 403
+ L L + L+ +D K RG +HL++ Y+PF K+E Q+ +L ES
Sbjct: 301 VWLDLVKDLEIQ--RDKKRRGQVHLELLYYPFGKQEGVSNPFADQIQLTSLEKVLKTESN 358
Query: 404 KRAIEERKRLKEAGVIGSTM 423
+ +RK + GV+ T+
Sbjct: 359 GFDVNQRKNVIMRGVLSVTV 378
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 261 QGRLTVTVVKATSLKNKELIGKSDPYVILYVRP-MFKVKTKVIDDNLNPEWNETFPLIVE 319
+G L+VTV+ A L +++GK+DP+V+LY++ K KT+V+ + LNP WN+TF +VE
Sbjct: 371 RGVLSVTVISAEDLPPMDVMGKADPFVVLYLKKGETKKKTRVVTETLNPIWNQTFDFVVE 430
Query: 320 DKETQSVIFEVYDEDRLQQD 339
D ++ EV+D D +D
Sbjct: 431 DALHDLLMVEVWDHDTFGKD 450
>Os09g0538800 Similar to Synaptotagmin C
Length = 539
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 203/344 (59%), Gaps = 10/344 (2%)
Query: 59 PEWISFPQYEQVKWLNKHLSKLWPFVDQAATAVVKESVEPLLDDYRPP-GIKSLKFSKFS 117
P W+ P Y+++ WLN+ L +WP++++A + +P++++ R ++S++F +
Sbjct: 60 PLWVKNPDYDRIDWLNRFLEMMWPYLNKAICRTALDIAKPIIEENRKTYKLESIEFESLT 119
Query: 118 LGTVSPKIEGIRIQNIQPGQIIMDIDLRWGGDPSIILAVDAVVASLPIQLKDLQVYTIVR 177
LG++ P +G+++ + ++IM+ L+W +P++ + V A +Q+ DLQV+ R
Sbjct: 120 LGSLPPTFQGMKVYVTEEQELIMEPSLKWAANPNVTVVVKAYGLKATVQIVDLQVFASPR 179
Query: 178 VVFQ-LSEEIPCISAVVVALLAEPEPKIQYTLKAIGGSLTAVPGLSDMIDDTVNSIVSDM 236
+ + L PC + ++V+L+ +P + + LK G L A+PGL + +T+ V+ M
Sbjct: 180 ITLKPLVPTFPCFAKILVSLMEKPH--VDFGLKLFGADLMAIPGLYRFVQETIKKQVASM 237
Query: 237 LKWPHRLVVPLGVNVDTSELELKPQGRLTVTVVKATSLKNKELIGKSDPYVILYVR--PM 294
WP L VP+ +D S+ KP G L V V++A +L+ K+L+GKSDPYV L + +
Sbjct: 238 YLWPKTLEVPI---MDPSKASKKPVGILLVKVLRAQNLRKKDLLGKSDPYVKLKMSDDKL 294
Query: 295 FKVKTKVIDDNLNPEWNETFPLIVEDKETQSVIFEVYDEDRLQQDKKLGVAKLAVNSLQP 354
KT V NLNPEWNE F +V D ETQ++ V+D +++ + +K+G+ + + L
Sbjct: 295 PSKKTTVKRSNLNPEWNEDFKFVVTDPETQALEINVFDWEQVGKHEKMGMNNILLKELPA 354
Query: 355 EATSEITLKLQQSLDSLKIKDTKDRGTLHLQVTYHPFSKEEQME 398
+ T +T+ L +++D +++ K RG L L+VTY PF KEE ME
Sbjct: 355 DETKVMTVNLLKTMDPNDVQNEKSRGQLTLEVTYKPF-KEEDME 397
>Os02g0448400 Similar to Synaptotagmin C
Length = 538
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/355 (32%), Positives = 202/355 (56%), Gaps = 9/355 (2%)
Query: 59 PEWISFPQYEQVKWLNKHLSKLWPFVDQAATAVVKESVEPLL-DDYRPPGIKSLKFSKFS 117
P W+ P ++++ WLNK + +WP++D+A KE +P++ ++ I S++F +
Sbjct: 60 PHWVKNPDFDRIDWLNKFVENIWPYLDKAICKTAKEIAKPIIAENTAKYKIDSVEFETLT 119
Query: 118 LGTVSPKIEGIRIQNIQPGQIIMDIDLRWGGDPSIILAVDAVVASLPIQLKDLQVYTIVR 177
LG++ P +G+++ ++IM+ ++W G+P+I + V A Q+ DL V+ + R
Sbjct: 120 LGSLPPTFQGMKVYTTDEQELIMEPSIKWAGNPNITVVVKAFGLKATAQVIDLHVFALPR 179
Query: 178 VVFQ-LSEEIPCISAVVVALLAEPEPKIQYTLKAIGGSLTAVPGLSDMIDDTVNSIVSDM 236
+ + L PC + +VV+L+ +P + + LK +G L A+PGL + + + + V++M
Sbjct: 180 ITLKPLVPSFPCFAKIVVSLMEKPH--VDFGLKLLGADLMAIPGLYVFVQEIIKTQVANM 237
Query: 237 LKWPHRLVVPLGVNVDTSELELKPQGRLTVTVVKATSLKNKELIGKSDPYVILYV--RPM 294
WP L VP+ +D ++ + KP G L V +V+A L K+ +GKSDPYV L + +
Sbjct: 238 YLWPKVLEVPI---MDPAKAQKKPVGILHVNIVRAVKLTKKDFLGKSDPYVKLKLTEEKL 294
Query: 295 FKVKTKVIDDNLNPEWNETFPLIVEDKETQSVIFEVYDEDRLQQDKKLGVAKLAVNSLQP 354
KT V NLNPEWNE F L+V+D E+Q++ VYD +++ + K+G++ + + L P
Sbjct: 295 PSKKTSVKRSNLNPEWNEDFKLVVKDPESQALELTVYDWEQVGKHDKIGMSVIPLKELIP 354
Query: 355 EATSEITLKLQQSLDSLKIKDTKDRGTLHLQVTYHPFSKEEQMEALESEKRAIEE 409
+ +TL L +++D+ + K RG L + VTY PF + + E IE+
Sbjct: 355 DEAKSLTLDLHKTMDANDPANDKFRGQLTVDVTYKPFKEGDSDVDTSDESGTIEK 409
>Os01g0819200 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 442
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 153/344 (44%), Gaps = 93/344 (27%)
Query: 56 DNFPE---WISFPQYEQVKWLNKHLSKLWPFVDQAATAVVKESVEPLL----DDYRPPGI 108
D PE W+ P Y+++ WLN+ L +WP++++A + ++ P++ + Y+ I
Sbjct: 54 DTLPEIPLWLKNPDYDRLDWLNRFLELMWPYLNKAICRIAQDVANPIIAKNKEKYK---I 110
Query: 109 KSLKFSKFSLGTVSPKIEGIRIQNIQPGQIIMDIDLRWGGDPSIILAVDAVVASLPIQLK 168
+KF F+LG++ P +G+++Q +++M+ L+W G+P+ + V A
Sbjct: 111 DYIKFETFTLGSLPPTFQGVKVQVTNEQELVMEPSLKWAGNPNTTVVVKA---------- 160
Query: 169 DLQVYTIVRVVFQLSEEIPCISAVVVALLAEPEPKIQYTLKAIGGSLTAVPGLSDMIDDT 228
L A +P + + LK +G + A+P L + +T
Sbjct: 161 -------------------------YGLKATIQPHVDFGLKLLGADVMAIPVLYKFVQET 195
Query: 229 VNSIVSDMLKWPHRLVVPLGVNVDTSELELKPQGRLTVTVVKATSLKNKELIGKSDPYV- 287
+ V+ M WP L VP+ +D S+ KP G L V V++A +L+ K +GK DP++
Sbjct: 196 IMDQVASMFLWPKTLEVPI---MDPSKASKKPVGILLVKVLRAQNLREKGPLGKRDPFIS 252
Query: 288 ILYVRPMFKVKTKVIDDNLNPEWNETFPLIVEDKETQSVIFEVYDEDRLQQDKKLGVAKL 347
LY + +D+KLG+ K+
Sbjct: 253 FLY-------------------------------------------GQFGKDEKLGMCKI 269
Query: 348 AVNSLQPEATSEITLKLQQSLDSLKIKDTKDRGTLHLQVTYHPF 391
++ L P T IT L ++++ I++ K G + L++TY PF
Sbjct: 270 SLKKLTP-GTEVITDNLIKTMEPNGIQNEKSAGEITLELTYKPF 312
>Os01g0242600 C2 calcium/lipid-binding region, CaLB domain containing protein
Length = 674
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/352 (22%), Positives = 163/352 (46%), Gaps = 35/352 (9%)
Query: 68 EQVKWLNKHLSKLWPF-VDQAATAVVKESVEPLLDDYRPPGIKSLKFSKFSLGTVSPKIE 126
E V+WLN + K+WP +++ + +++ + LD ++P + + +G SP
Sbjct: 73 ESVRWLNYAIKKMWPICMEKIVSQLLRPIIPWFLDKFKPWTVSKAGVQELYMGRNSPLFT 132
Query: 127 GIRI--QNIQPGQIIMDIDLRW--GGDPSIILAVD-----AVVASLPIQLKDLQVYTIVR 177
+R+ + ++++I + + D S +L++ + + + L + V +
Sbjct: 133 SMRVLPETSDDDHLVLEIGMNFLSAEDMSAVLSMQLHKSVGLGMTANMHLTSMHVEGKIL 192
Query: 178 VVFQLSEEIPCISAVVVALLAEPEPKIQYTLKAIGGS---LTAVPGLSDMIDDTVNSIVS 234
V + P + V + + EP P Q T+K + G +T PG+S +D +++
Sbjct: 193 VGVKFVRSWPFLGRVRLCFV-EP-PYFQMTVKPLIGHGLDVTEFPGISGWLDKLMDTAFG 250
Query: 235 DMLKWPHRLVVPLGVNVDT-------SELELKPQGRLTVTVVKATSLKNKELIGKSDPYV 287
L P+ LV+ + V T S E P + + +++ + +K ++ G SDPYV
Sbjct: 251 QTLVEPNMLVIDVEKFVSTPSDNDWFSIEERPPVAYVKLEILEGSDMKPSDMNGLSDPYV 310
Query: 288 ILYVRPMFKVKTKVIDDNLNPEWNETFPLIVEDKET-QSVIFEVYDEDRLQQDKKLGVAK 346
+ P FK +T++ L+P+W E F + + E+ + EV D+D + D LG
Sbjct: 311 KGRLGP-FKFQTQIQKKTLSPKWFEEFKIPITSWESLNELAMEVCDKDHMFDD-SLGTCT 368
Query: 347 LAVNSLQPEATSEITLKLQQSLDSLKIKDTKDRGTLHLQVTYHPFSKEEQME 398
+ ++ L+ Q+ + +K+ K +G +HL +T S+E+ +E
Sbjct: 369 IDIHELR---------GGQRHDKWISLKNVK-KGRIHLAITVEDISEEKGLE 410
>Os02g0313700 Similar to Synaptotagmin C (Synaptic vesicle protein O-p65-C)
Length = 718
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 156/348 (44%), Gaps = 49/348 (14%)
Query: 68 EQVKWLNKHLSKLWP-FVDQAATAVVKESVEP-LLDDYRPPGIKSLKFSKFSLGTVSPKI 125
E V+WLN + K+WP +++ A+ + P L+ ++P + LG P
Sbjct: 73 ETVRWLNYAVEKIWPVCMERVASEQFLLPIFPWFLEKFKPWTARKAVIQDLYLGRNPPMF 132
Query: 126 EGIRI--QNIQPGQIIMDIDLRWGGDPSIILAVDAVVASLPIQLK--------------D 169
IR+ Q+ ++++I + + L+ D + A++ +QL+
Sbjct: 133 TDIRVVRQSTDDDHLVLEIGMNF-------LSADDMNATMAVQLRKRLGFGITANMHITG 185
Query: 170 LQVYTIVRVVFQLSEEIPCISAVVVALLAEPEPKIQYTLKAIGGS---LTAVPGLSDMID 226
+ V V V + + P I V V + EP P Q T+K + G +T +PG+S +D
Sbjct: 186 MHVEGKVLVGVRFLRQWPYIGRVRVCFV-EP-PYFQMTVKPLFGHGLDVTELPGISGWLD 243
Query: 227 DTVNSIVSDMLKWPHRLVVPL----GVNVDT--SELELKPQGRLTVTVVKATSLKNKELI 280
++ L P+ LV+ L + D+ S E P V +++ +K +
Sbjct: 244 RMLDVAFGQTLVEPNMLVIDLEKFASESTDSWFSVDEKPPIAHAKVEILEGADMKPSDPN 303
Query: 281 GKSDPYVILYVRPMFKVKTKVIDDNLNPEWNETFPLIVEDKETQSVI-FEVYDEDRLQQD 339
G +DPYV ++ P ++ +TK+ LNP+W E F + V +++ +V D+D + D
Sbjct: 304 GLADPYVKGHLGP-YRFQTKIHKKTLNPKWMEEFKIPVTSWAALNLLSLQVRDKDPIFDD 362
Query: 340 KKLGVAKLAVNSLQPEATSEITLKLQQSLDSLKIKDTKDRGTLHLQVT 387
LG +++N L+ +I + L+ IK G +H+ VT
Sbjct: 363 -TLGDCSISINKLRGGQRHDIWIALKN------IK----TGRIHIAVT 399
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,921,733
Number of extensions: 527751
Number of successful extensions: 1518
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1514
Number of HSP's successfully gapped: 9
Length of query: 515
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 410
Effective length of database: 11,553,331
Effective search space: 4736865710
Effective search space used: 4736865710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)