FiT-DB / Search/ Help/ Sample detail

Os02g0313700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Synaptotagmin C (Synaptic vesicle protein O-p65-C).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0168) R2 : 0.592
β1 : 1.12 (0.0644) R2dD : 0.314 R2D : 0.0961
β2 : 0.671 (0.043) R2dC : 0.225 R2C : 0.237
β3 : -0.714 (0.0502) R2dE : 0.222 R2E : -0.000724
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.319 (0.0375) R2dN8 : 0.0883 R2N8 : -0.0512
σ : 0.31
deviance : 44.17
__
_____
C
peak time of C : 5.05
E
wheather : temperature
threshold : 27.2
memory length : 6267
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.38 0.309 10.2 1.38 0.681 -0.78 -0.343 0.873 0.373 5.08 26.93 6181 -- --
44.37 0.31 10.2 1.18 0.665 -0.75 -0.446 -- 0.359 5.07 27.1 6220 -- --
43.56 0.307 10.2 1.38 0.678 -0.773 -- 0.872 0.381 5.09 27.14 6212 -- --
44.17 0.31 10.3 1.12 0.671 -0.714 -- -- 0.319 5.05 27.2 6267 -- --
64.07 0.375 10.3 0.979 -- -0.545 -- 0.133 0.238 -- 27.1 6253 -- --
62.88 0.372 10.3 0.8 0.718 -- -0.42 -- 0.124 5.21 -- -- -- --
63.31 0.373 10.3 0.8 0.716 -- -- -- 0.126 5.25 -- -- -- --
64.11 0.375 10.3 0.953 -- -0.54 -- -- 0.231 -- 27.1 6253 -- --
71.16 0.393 10.3 -- 0.706 -0.463 -- -- 0.131 5.09 28.4 6190 -- --
90.08 0.443 10.3 0.824 -- -- -- -- 0.144 -- -- -- -- --
80.16 0.419 10.3 -- 0.73 -- -- -- 0.0368 5.21 -- -- -- --
87.69 0.438 10.3 -- -- -0.473 -- -- 0.116 -- 27.1 6253 -- --
108.01 0.485 10.3 -- -- -- -- -- 0.0524 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.32 temperature 20.0 90 > th dose dependent rect. 8 21
2 43.41 radiation 10.0 14400 < th dose independent rect. 16 14
4 43.46 radiation 10.0 14400 < th dose independent rect. 16 8
5 43.47 radiation 10.0 14400 < th dose independent rect. 16 3
16 43.54 temperature 20.0 720 > th dose dependent rect. 2 17
27 43.84 humidity 90.0 43200 > th dose independent rect. 21 1
28 43.84 humidity 90.0 43200 < th dose independent rect. 20 2
30 43.88 humidity 90.0 43200 > th dose dependent rect. 21 1
47 43.97 radiation 1.0 1440 < th dose dependent rect. 8 22
58 44.10 radiation 10.0 14400 > th dose dependent rect. 16 15
61 44.13 precipitation 0.1 43200 > th dose independent rect. 17 2
62 44.13 precipitation 0.1 43200 < th dose independent rect. 17 2
63 44.13 precipitation 0.1 43200 < th dose dependent rect. 17 2
81 44.23 radiation 1.0 14400 > th dose dependent rect. 17 13
84 44.25 humidity 70.0 14400 > th dose independent rect. 19 1
90 44.27 humidity 90.0 43200 < th dose independent rect. 18 8
105 44.30 temperature 20.0 720 > th dose dependent sin 2 NA
120 44.36 precipitation 0.1 43200 > th dose dependent rect. 14 5
123 44.37 humidity 70.0 14400 > th dose independent rect. 19 12
128 44.39 radiation 10.0 14400 < th dose independent sin 14 NA
154 44.49 humidity 90.0 43200 < th dose independent rect. 17 18
156 44.50 humidity 70.0 14400 > th dose independent rect. 19 5
175 44.53 temperature 30.0 90 < th dose dependent sin 20 NA
197 44.55 radiation 1.0 1440 < th dose dependent sin 14 NA
218 44.58 precipitation 0.1 43200 > th dose dependent rect. 11 8
225 44.60 humidity 90.0 43200 < th dose independent sin 15 NA
240 44.63 radiation 1.0 14400 > th dose dependent rect. 17 2
254 44.64 radiation 40.0 14400 < th dose dependent rect. 18 6
257 44.65 humidity 90.0 43200 > th dose independent rect. 18 8
274 44.65 temperature 25.0 720 > th dose dependent rect. 16 22
293 44.68 humidity 70.0 14400 < th dose independent rect. 19 1
316 44.70 humidity 70.0 14400 < th dose independent rect. 18 13
327 44.71 radiation 10.0 14400 < th dose dependent rect. 18 11
383 44.78 humidity 70.0 14400 < th dose independent rect. 18 3
403 44.80 humidity 90.0 43200 < th dose independent rect. 8 22
405 44.80 radiation 20.0 14400 > th dose dependent rect. 15 17
428 44.82 humidity 90.0 43200 > th dose independent rect. 18 16
451 44.83 temperature 10.0 720 > th dose dependent rect. 3 16
511 44.87 radiation 20.0 14400 < th dose dependent rect. 17 13
516 44.88 humidity 90.0 43200 > th dose independent rect. 9 1
546 44.90 radiation 40.0 14400 < th dose dependent rect. 18 1
583 44.93 temperature 20.0 10 > th dose dependent sin 19 NA
596 44.94 humidity 90.0 43200 < th dose independent no NA NA
597 44.94 humidity 80.0 43200 > th dose independent rect. 12 1
611 44.95 humidity 90.0 43200 < th dose independent rect. 11 16
652 44.98 humidity 90.0 43200 < th dose independent rect. 24 23
658 44.99 temperature 25.0 90 > th dose independent sin 20 NA
659 44.99 humidity 90.0 43200 > th dose independent sin 15 NA
663 44.99 temperature 25.0 720 > th dose dependent no NA NA
694 45.01 humidity 90.0 43200 < th dose independent rect. 3 23
701 45.01 radiation 1.0 1440 < th dose dependent rect. 5 19
720 45.02 radiation 1.0 1440 < th dose dependent rect. 5 17
725 45.02 temperature 25.0 720 > th dose dependent rect. 3 23
732 45.03 radiation 1.0 1440 < th dose dependent rect. 5 14
740 45.04 temperature 25.0 4320 > th dose independent rect. 8 3
803 45.07 temperature 25.0 4320 > th dose independent rect. 9 1
813 45.07 radiation 1.0 1440 < th dose dependent rect. 8 17
852 45.09 temperature 30.0 90 < th dose dependent rect. 5 18
863 45.10 temperature 25.0 720 > th dose independent rect. 6 13
870 45.10 radiation 1.0 14400 > th dose dependent rect. 4 2
906 45.11 temperature 25.0 4320 < th dose independent rect. 9 1
907 45.11 humidity 80.0 43200 < th dose independent rect. 12 2
910 45.11 radiation 1.0 1440 < th dose dependent rect. 8 14
919 45.11 radiation 1.0 1440 < th dose dependent rect. 20 23
927 45.12 radiation 1.0 1440 < th dose dependent no NA NA
928 45.12 radiation 1.0 1440 < th dose dependent rect. 8 11
942 45.12 radiation 1.0 1440 < th dose dependent rect. 23 23
944 45.13 precipitation 0.1 43200 > th dose independent rect. 11 7
956 45.13 radiation 1.0 1440 < th dose dependent rect. 23 20
961 45.13 radiation 1.0 1440 < th dose dependent rect. 11 23
965 45.14 precipitation 0.1 43200 < th dose independent rect. 11 7
972 45.14 humidity 90.0 43200 > th dose independent rect. 8 22
976 45.14 precipitation 0.1 43200 < th dose dependent rect. 11 7