Os08g0300200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : C2 domain containing protein.
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Os08g0300200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : C2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.61 | 0.251 | 11.9 | -0.656 | 0.251 | 1.04 | -0.928 | -1.1 | -0.096 | 15.3 | 20.99 | 799 | -- | -- |
| 29.24 | 0.252 | 11.9 | -0.408 | 0.339 | 0.94 | -0.88 | -- | -0.0278 | 16.1 | 20.56 | 909 | -- | -- |
| 30.19 | 0.256 | 12 | -0.715 | 0.461 | 0.857 | -- | -1.03 | -0.106 | 17.7 | 21.43 | 1282 | -- | -- |
| 30.97 | 0.259 | 11.9 | -0.425 | 0.454 | 0.837 | -- | -- | -0.0323 | 17.4 | 20.78 | 1163 | -- | -- |
| 32.09 | 0.264 | 11.9 | -0.715 | -- | 1.12 | -- | -1.55 | -0.121 | -- | 20.7 | 506 | -- | -- |
| 50.6 | 0.333 | 11.9 | -0.154 | 0.422 | -- | -0.562 | -- | 0.152 | 18.1 | -- | -- | -- | -- |
| 51.13 | 0.335 | 11.9 | -0.151 | 0.423 | -- | -- | -- | 0.149 | 18.6 | -- | -- | -- | -- |
| 33.41 | 0.269 | 11.9 | -0.436 | -- | 1.16 | -- | -- | -0.0369 | -- | 17.13 | 524 | -- | -- |
| 35.32 | 0.277 | 11.9 | -- | 0.463 | 0.725 | -- | -- | 0.0227 | 17.6 | 21.01 | 1164 | -- | -- |
| 60.46 | 0.363 | 11.9 | -0.161 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 51.73 | 0.336 | 11.9 | -- | 0.425 | -- | -- | -- | 0.165 | 18.6 | -- | -- | -- | -- |
| 37.68 | 0.286 | 11.9 | -- | -- | 0.924 | -- | -- | 0.0237 | -- | 20.69 | 528 | -- | -- |
| 61.14 | 0.365 | 11.9 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 16 | 28.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 18 | 28.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 24 | 28.97 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 27 | 28.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 34 | 29.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 35 | 29.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 44 | 29.18 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 50 | 29.23 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 105 | 29.45 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 110 | 29.47 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 126 | 29.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 133 | 29.56 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 166 | 29.63 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 231 | 29.75 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 320 | 29.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 390 | 30.01 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 425 | 30.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 520 | 30.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 631 | 30.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 781 | 30.58 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 820 | 30.64 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 830 | 30.65 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 857 | 30.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 884 | 30.73 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 910 | 30.77 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |