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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0819200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0302) R2 : 0.00734
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.117 (0.0636) R2dN8 : 0.00948 R2N8 : 0.00734
σ : 0.569
deviance : 148.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
136.29 0.549 2.95 -0.0801 0.181 0.331 0.352 -0.403 0.284 10.7 24.8 15 -- --
136.98 0.549 2.96 -0.202 0.182 0.32 0.533 -- 0.246 11 24.8 15 -- --
136.62 0.549 2.95 -0.0325 0.181 0.329 -- -0.541 0.295 10.5 24.79 14 -- --
138.07 0.551 2.96 -0.205 0.171 0.308 -- -- 0.244 10.4 24.8 15 -- --
138.45 0.551 2.96 -0.0504 -- 0.287 -- -0.527 0.272 -- 24.79 14 -- --
144.56 0.564 3 -0.278 0.179 -- 0.366 -- 0.0848 7.25 -- -- -- --
144.73 0.563 3 -0.273 0.192 -- -- -- 0.0829 6.13 -- -- -- --
139.71 0.551 2.97 -0.202 -- 0.28 -- -- 0.231 -- 24.8 25 -- --
138.99 0.549 2.96 -- 0.184 0.327 -- -- 0.27 10.9 24.7 12 -- --
146.63 0.566 3 -0.268 -- -- -- -- 0.0871 -- -- -- -- --
146.69 0.567 2.99 -- 0.188 -- -- -- 0.113 6.21 -- -- -- --
140.78 0.553 2.96 -- -- 0.292 -- -- 0.258 -- 24.89 25 -- --
148.52 0.569 2.99 -- -- -- -- -- 0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.70 radiation 1.0 43200 < th dose dependent rect. 3 1
2 127.90 humidity 90.0 30 > th dose dependent rect. 2 1
3 128.17 humidity 90.0 10 > th dose independent rect. 2 1
8 128.31 temperature 30.0 30 < th dose dependent rect. 2 1
10 128.34 temperature 25.0 90 > th dose independent rect. 2 1
14 128.36 wind 5.0 30 < th dose independent rect. 2 1
16 128.38 precipitation 0.1 30 < th dose independent rect. 3 23
17 128.38 precipitation 0.1 30 < th dose dependent rect. 3 23
19 128.39 temperature 10.0 30 > th dose independent rect. 2 1
21 128.39 temperature 30.0 30 < th dose independent rect. 2 1
22 128.39 humidity 50.0 30 > th dose independent rect. 2 1
25 128.39 atmosphere 995.0 30 > th dose independent rect. 2 1
27 128.39 atmosphere 1010.0 30 < th dose independent rect. 2 1
29 128.39 radiation 1.0 30 < th dose independent rect. 2 1
34 128.39 precipitation 0.1 30 < th dose independent rect. 2 1
35 128.39 temperature 10.0 30 > th dose independent rect. 3 23
36 128.39 atmosphere 995.0 30 > th dose dependent rect. 2 1
37 128.39 radiation 1.0 30 < th dose dependent rect. 2 1
42 128.39 precipitation 0.1 30 < th dose dependent rect. 2 1
44 128.40 wind 7.0 30 < th dose dependent rect. 2 1
47 128.41 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 128.44 wind 1.0 30 > th dose independent rect. 2 1
50 128.44 temperature 10.0 30 > th dose dependent rect. 2 1
60 128.55 wind 1.0 30 < th dose independent rect. 2 1
65 128.59 atmosphere 995.0 30 > th dose independent rect. 3 23
122 129.03 wind 9.0 1440 < th dose independent rect. 3 1
123 129.03 temperature 10.0 1440 > th dose independent rect. 3 1
126 129.03 temperature 30.0 1440 < th dose independent rect. 3 1
130 129.03 humidity 50.0 1440 > th dose independent rect. 3 1
139 129.03 atmosphere 995.0 1440 > th dose independent rect. 3 1
140 129.03 radiation 1.0 1440 < th dose independent rect. 3 1
160 129.03 temperature 10.0 1440 > th dose independent rect. 4 23
163 129.03 radiation 1.0 1440 < th dose dependent rect. 3 1
186 130.18 temperature 10.0 30 > th dose dependent rect. 3 23
194 130.74 wind 9.0 30 < th dose independent rect. 3 23
225 131.03 humidity 50.0 30 > th dose independent rect. 3 23
233 131.71 humidity 80.0 30 < th dose dependent rect. 19 3
235 131.76 temperature 25.0 10 < th dose independent rect. 2 19
244 132.15 humidity 80.0 30 < th dose dependent rect. 19 11
251 132.20 humidity 80.0 30 < th dose dependent rect. 19 9
287 132.85 temperature 25.0 10 < th dose independent rect. 24 22
292 132.95 temperature 30.0 90 < th dose dependent rect. 1 20
323 133.44 temperature 30.0 90 < th dose dependent rect. 14 7
327 133.64 temperature 30.0 10 < th dose dependent rect. 2 20
365 133.97 atmosphere 1015.0 30 < th dose independent rect. 3 23
368 134.03 temperature 25.0 10 < th dose independent rect. 2 15
373 134.17 temperature 25.0 10 < th dose dependent rect. 15 7
393 134.47 humidity 90.0 90 < th dose independent rect. 2 1
402 134.58 temperature 25.0 10 < th dose independent rect. 2 8
429 134.80 radiation 1.0 90 < th dose dependent rect. 1 20
432 134.84 atmosphere 1000.0 10 > th dose dependent rect. 2 8
443 134.93 radiation 30.0 90 < th dose independent rect. 1 10
448 134.95 temperature 15.0 4320 > th dose independent rect. 22 2
449 134.97 humidity 60.0 43200 > th dose independent rect. 1 1
450 134.97 radiation 40.0 4320 > th dose independent rect. 7 1
466 134.97 radiation 40.0 4320 > th dose dependent rect. 7 1
485 135.01 temperature 15.0 4320 < th dose independent rect. 22 2
488 135.08 temperature 25.0 10 < th dose independent rect. 12 23
504 135.18 temperature 15.0 4320 < th dose dependent rect. 23 1
523 135.30 temperature 30.0 10 < th dose dependent rect. 12 10
528 135.32 atmosphere 995.0 10 > th dose dependent rect. 2 19
529 135.34 radiation 30.0 4320 > th dose dependent rect. 16 1
546 135.37 humidity 60.0 43200 < th dose dependent rect. 23 3
558 135.44 humidity 60.0 43200 < th dose independent rect. 23 3
559 135.44 wind 9.0 90 < th dose independent rect. 1 20
562 135.45 humidity 60.0 43200 < th dose independent rect. 1 1
565 135.46 wind 9.0 270 < th dose independent rect. 22 23
579 135.53 wind 9.0 10 < th dose independent rect. 2 19
593 135.59 temperature 15.0 4320 < th dose independent rect. 4 1
608 135.63 temperature 25.0 10 > th dose independent rect. 22 22
621 135.68 humidity 50.0 43200 < th dose independent rect. 6 1
622 135.68 atmosphere 1000.0 90 > th dose independent rect. 1 20
623 135.69 precipitation 0.1 90 < th dose independent rect. 1 20
625 135.69 precipitation 0.1 90 < th dose dependent rect. 1 20
629 135.72 radiation 40.0 90 < th dose dependent rect. 1 10
633 135.73 temperature 10.0 10 > th dose dependent rect. 10 16
634 135.74 radiation 1.0 90 < th dose independent rect. 1 20
639 135.76 temperature 30.0 10 < th dose dependent rect. 2 14
640 135.76 temperature 10.0 90 > th dose dependent rect. 10 15
646 135.77 temperature 15.0 14400 < th dose dependent rect. 9 3
649 135.78 precipitation 0.1 10 < th dose independent rect. 21 5
651 135.78 precipitation 0.1 10 < th dose dependent rect. 21 5
654 135.80 temperature 10.0 90 > th dose independent rect. 21 4
655 135.80 temperature 30.0 90 < th dose independent rect. 21 4
656 135.80 humidity 50.0 90 > th dose independent rect. 21 4
659 135.80 atmosphere 995.0 90 > th dose independent rect. 21 4
660 135.80 radiation 1.0 90 < th dose independent rect. 21 4
665 135.80 precipitation 0.1 90 < th dose independent rect. 21 4
667 135.80 temperature 10.0 90 > th dose independent rect. 1 20
668 135.80 atmosphere 1015.0 90 < th dose independent rect. 1 20
669 135.80 radiation 1.0 90 < th dose dependent rect. 21 4
674 135.80 precipitation 0.1 90 < th dose dependent rect. 21 4
676 135.81 humidity 70.0 90 > th dose independent rect. 1 10
680 135.82 wind 9.0 90 < th dose independent rect. 21 4
681 135.82 temperature 15.0 14400 < th dose dependent rect. 11 1
686 135.84 precipitation 0.1 10 < th dose independent rect. 2 19
687 135.84 temperature 25.0 10 < th dose independent rect. 18 23
689 135.84 precipitation 0.1 10 < th dose dependent rect. 2 19
733 135.90 temperature 25.0 90 < th dose independent rect. 14 7
738 135.90 temperature 15.0 14400 < th dose dependent rect. 5 7
745 135.91 atmosphere 1000.0 10 > th dose independent rect. 2 19
750 135.92 humidity 60.0 43200 < th dose dependent rect. 6 1
757 135.93 humidity 60.0 43200 > th dose independent rect. 23 8
764 135.94 precipitation 0.1 270 < th dose independent rect. 22 23
766 135.94 precipitation 0.1 270 < th dose dependent rect. 22 23
771 135.97 humidity 70.0 10 > th dose independent rect. 2 8
774 135.97 radiation 1.0 43200 < th dose dependent rect. 20 2
825 136.04 humidity 60.0 43200 < th dose independent rect. 23 8
854 136.06 temperature 10.0 10 > th dose independent rect. 21 5
855 136.06 temperature 30.0 10 < th dose independent rect. 21 5
856 136.06 humidity 50.0 10 > th dose independent rect. 21 5
859 136.06 atmosphere 995.0 10 > th dose independent rect. 21 5
860 136.06 radiation 1.0 10 < th dose independent rect. 21 5
865 136.06 temperature 10.0 10 > th dose independent rect. 2 19
867 136.06 atmosphere 1015.0 10 < th dose independent rect. 2 19
870 136.06 radiation 1.0 10 < th dose dependent rect. 21 5
877 136.07 wind 9.0 10 < th dose independent rect. 21 5
882 136.08 wind 1.0 270 > th dose independent rect. 23 21
899 136.10 radiation 1.0 720 < th dose dependent rect. 18 9
916 136.12 temperature 15.0 4320 < th dose independent rect. 20 11
927 136.12 radiation 10.0 14400 < th dose dependent rect. 22 5
931 136.13 temperature 15.0 14400 < th dose independent rect. 7 6
932 136.13 wind 1.0 10 > th dose independent rect. 21 22
942 136.15 humidity 50.0 43200 > th dose independent rect. 6 1
945 136.15 radiation 40.0 10 < th dose independent rect. 2 8
951 136.15 humidity 50.0 90 > th dose dependent rect. 21 4
961 136.17 temperature 30.0 1440 < th dose independent rect. 22 5
965 136.17 humidity 50.0 1440 > th dose independent rect. 22 5
974 136.17 atmosphere 995.0 1440 > th dose independent rect. 22 5
975 136.17 radiation 1.0 1440 < th dose independent rect. 22 5
996 136.17 temperature 10.0 1440 > th dose independent rect. 3 19