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Os09g0538800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Synaptotagmin C.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0212) R2 : 0.683
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.56 (0.0523) R2dC : 0.621 R2C : 0.615
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.389 (0.0446) R2dN8 : 0.0683 R2N8 : 0.0615
σ : 0.4
deviance : 73.16
__
_____
C
peak time of C : 2.57
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.45 0.353 10.7 -0.2 1.13 0.841 0.294 0.648 0.373 3.82 42.03 10 -- --
57.56 0.353 10.7 -0.22 1.14 0.818 0.652 -- 0.372 3.7 42.8 9 -- --
56.64 0.351 10.7 -0.199 1.13 0.841 -- 0.774 0.372 3.84 41.66 9 -- --
58.81 0.357 10.7 -0.219 1.13 0.853 -- -- 0.37 3.83 41.82 9 -- --
73 0.398 10.7 -0.101 -- 1.31 -- 1.05 0.436 -- 5.14 284 -- --
69.41 0.391 10.7 -0.236 1.56 -- 0.755 -- 0.365 2.54 -- -- -- --
71.44 0.396 10.7 -0.256 1.57 -- -- -- 0.361 2.57 -- -- -- --
74.03 0.401 10.7 -0.172 -- 1.31 -- -- 0.416 -- 4.02 312 -- --
60.18 0.361 10.7 -- 1.12 0.859 -- -- 0.395 3.87 41.55 9 -- --
215.51 0.686 10.7 -0.189 -- -- -- -- 0.4 -- -- -- -- --
73.16 0.4 10.7 -- 1.56 -- -- -- 0.389 2.57 -- -- -- --
74.81 0.403 10.7 -- -- 1.31 -- -- 0.436 -- 3.85 312 -- --
216.45 0.687 10.7 -- -- -- -- -- 0.421 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.49 radiation 30.0 90 < th dose dependent rect. 3 6
2 43.58 radiation 40.0 90 < th dose dependent rect. 3 8
5 43.84 radiation 40.0 10 < th dose dependent rect. 3 19
8 44.59 radiation 20.0 90 < th dose independent rect. 3 6
11 44.83 radiation 10.0 270 < th dose dependent rect. 1 7
15 45.08 temperature 15.0 90 > th dose independent rect. 3 18
16 45.10 radiation 40.0 10 < th dose independent rect. 3 19
17 45.14 wind 9.0 90 < th dose independent rect. 3 18
20 45.18 radiation 40.0 10 < th dose dependent rect. 3 8
23 45.31 radiation 20.0 10 < th dose independent rect. 3 6
25 45.33 radiation 1.0 270 < th dose independent rect. 1 7
27 45.35 radiation 40.0 10 < th dose dependent rect. 3 6
29 45.36 wind 9.0 270 < th dose independent rect. 1 19
31 45.38 temperature 15.0 270 > th dose independent rect. 1 19
32 45.39 atmosphere 1010.0 270 < th dose independent rect. 1 5
35 45.45 precipitation 0.1 270 < th dose independent rect. 6 19
38 45.45 precipitation 0.1 270 < th dose dependent rect. 6 19
40 45.48 precipitation 0.1 90 < th dose independent rect. 21 6
41 45.48 precipitation 0.1 90 < th dose dependent rect. 21 6
48 45.55 temperature 10.0 90 > th dose independent rect. 21 6
49 45.55 temperature 30.0 90 < th dose independent rect. 21 6
50 45.55 humidity 50.0 90 > th dose independent rect. 21 6
53 45.55 atmosphere 995.0 90 > th dose independent rect. 21 6
54 45.55 radiation 1.0 90 < th dose independent rect. 21 6
60 45.55 atmosphere 1015.0 90 < th dose independent rect. 3 18
61 45.55 radiation 1.0 90 < th dose dependent rect. 21 6
66 45.56 wind 9.0 90 < th dose independent rect. 21 6
70 45.61 wind 7.0 270 < th dose independent rect. 1 5
71 45.62 precipitation 0.1 270 < th dose independent rect. 1 5
72 45.62 precipitation 0.1 270 < th dose dependent rect. 1 5
73 45.62 humidity 50.0 90 > th dose dependent rect. 21 6
78 45.66 temperature 10.0 270 > th dose independent rect. 1 5
80 45.66 temperature 30.0 270 < th dose independent rect. 1 5
81 45.66 humidity 50.0 270 > th dose independent rect. 1 5
84 45.66 atmosphere 995.0 270 > th dose independent rect. 1 5
89 45.66 humidity 70.0 270 > th dose independent rect. 19 6
90 45.66 temperature 10.0 270 > th dose independent rect. 6 19
109 45.81 atmosphere 1015.0 270 < th dose independent rect. 1 19
120 45.87 atmosphere 995.0 90 > th dose independent rect. 3 18
148 46.01 wind 9.0 270 < th dose independent rect. 11 9
152 46.03 radiation 20.0 270 < th dose independent rect. 24 8
153 46.03 wind 9.0 270 < th dose independent rect. 24 21
154 46.04 radiation 1.0 270 < th dose independent rect. 1 18
157 46.08 radiation 20.0 90 < th dose independent rect. 3 8
159 46.13 radiation 1.0 270 < th dose independent rect. 1 11
164 46.19 radiation 20.0 30 < th dose independent rect. 3 19
174 46.25 temperature 15.0 270 > th dose independent rect. 11 9
178 46.27 temperature 15.0 270 > th dose independent rect. 24 21
186 46.38 atmosphere 1015.0 270 < th dose independent rect. 11 9
187 46.38 temperature 10.0 270 > th dose independent rect. 20 15
188 46.38 atmosphere 995.0 270 > th dose independent rect. 20 15
202 46.46 precipitation 0.1 270 < th dose independent rect. 1 18
203 46.46 precipitation 0.1 270 < th dose dependent rect. 1 18
205 46.48 precipitation 0.1 270 < th dose independent rect. 7 17
207 46.48 precipitation 0.1 270 < th dose dependent rect. 7 17
208 46.49 radiation 1.0 270 < th dose independent rect. 1 16
209 46.49 wind 9.0 270 < th dose independent rect. 6 19
213 46.51 wind 7.0 270 < th dose independent rect. 24 7
214 46.52 wind 9.0 270 < th dose independent rect. 20 15
216 46.53 precipitation 0.1 90 < th dose independent rect. 3 18
217 46.53 precipitation 0.1 90 < th dose dependent rect. 3 18
218 46.54 temperature 10.0 270 > th dose independent rect. 21 3
219 46.54 temperature 30.0 270 < th dose independent rect. 21 3
220 46.54 humidity 50.0 270 > th dose independent rect. 21 3
223 46.54 atmosphere 995.0 270 > th dose independent rect. 21 3
224 46.54 radiation 1.0 270 < th dose independent rect. 21 3
233 46.54 radiation 1.0 270 < th dose dependent rect. 21 3
241 46.57 wind 9.0 270 < th dose independent rect. 21 3
245 46.58 precipitation 0.1 270 < th dose independent rect. 21 3
256 46.58 precipitation 0.1 270 < th dose dependent rect. 21 3
259 46.59 humidity 50.0 90 > th dose dependent rect. 3 6
262 46.60 humidity 50.0 270 > th dose independent rect. 20 15
279 46.69 atmosphere 1015.0 270 < th dose independent rect. 24 21
281 46.70 humidity 50.0 270 > th dose dependent rect. 21 3
286 46.73 radiation 1.0 270 < th dose dependent rect. 1 18
290 46.78 wind 9.0 10 < th dose independent rect. 3 19
294 46.79 atmosphere 995.0 270 > th dose independent rect. 1 19
302 46.88 radiation 10.0 270 < th dose dependent rect. 1 11
303 46.89 precipitation 0.1 270 < th dose independent rect. 20 15
304 46.89 precipitation 0.1 270 < th dose dependent rect. 20 15
317 47.03 atmosphere 1010.0 90 < th dose independent rect. 3 6
319 47.03 precipitation 0.1 10 < th dose independent rect. 3 19
320 47.03 precipitation 0.1 10 < th dose dependent rect. 3 19
328 47.09 humidity 70.0 90 > th dose independent rect. 3 6
361 47.18 wind 9.0 10 < th dose independent rect. 22 5
362 47.18 temperature 10.0 10 > th dose independent rect. 22 5
363 47.18 temperature 30.0 10 < th dose independent rect. 22 5
364 47.18 humidity 50.0 10 > th dose independent rect. 22 5
367 47.18 atmosphere 995.0 10 > th dose independent rect. 22 5
368 47.18 radiation 1.0 10 < th dose independent rect. 22 5
373 47.18 temperature 10.0 10 > th dose independent rect. 3 19
375 47.18 atmosphere 1015.0 10 < th dose independent rect. 3 19
379 47.18 radiation 1.0 10 < th dose dependent rect. 22 5
385 47.20 precipitation 0.1 10 < th dose independent rect. 22 5
387 47.20 wind 9.0 270 < th dose dependent rect. 1 5
388 47.20 precipitation 0.1 10 < th dose dependent rect. 22 5
391 47.21 wind 9.0 90 < th dose dependent rect. 21 6
397 47.24 wind 1.0 270 > th dose independent rect. 20 5
421 47.26 temperature 10.0 270 > th dose dependent rect. 1 5
433 47.31 atmosphere 995.0 10 > th dose independent rect. 3 19
437 47.33 humidity 50.0 270 > th dose dependent rect. 1 5
486 47.39 humidity 50.0 10 > th dose dependent rect. 22 5
568 47.55 humidity 50.0 10 > th dose dependent rect. 3 6
573 47.58 wind 1.0 270 > th dose independent rect. 1 5
579 47.62 humidity 70.0 10 > th dose independent rect. 3 6
596 47.67 precipitation 0.1 270 < th dose independent rect. 11 9
600 47.67 precipitation 0.1 270 < th dose dependent rect. 11 9
607 47.69 precipitation 0.1 270 < th dose independent rect. 24 21
610 47.69 precipitation 0.1 270 < th dose dependent rect. 24 21
617 47.72 humidity 50.0 10 > th dose dependent rect. 3 8
634 47.76 wind 9.0 10 < th dose dependent rect. 3 6
650 47.84 precipitation 0.1 90 < th dose independent rect. 3 6
660 47.84 precipitation 0.1 90 < th dose dependent rect. 3 6
662 47.85 wind 1.0 270 > th dose independent rect. 11 9
707 47.94 temperature 30.0 90 < th dose independent rect. 3 6
709 47.94 radiation 20.0 90 < th dose dependent rect. 3 12
722 47.98 wind 9.0 270 < th dose dependent rect. 21 3
724 47.99 wind 1.0 270 > th dose independent rect. 21 3
725 47.99 wind 9.0 90 < th dose independent rect. 3 6
726 47.99 temperature 10.0 90 > th dose independent rect. 3 6
729 47.99 atmosphere 995.0 90 > th dose independent rect. 3 6
731 47.99 temperature 10.0 90 > th dose independent rect. 9 18
737 48.01 temperature 10.0 270 > th dose dependent rect. 21 3
766 48.07 precipitation 0.1 30 < th dose independent rect. 9 18
768 48.07 precipitation 0.1 30 < th dose dependent rect. 9 18
770 48.08 atmosphere 995.0 90 > th dose dependent rect. 21 6
825 48.18 atmosphere 995.0 270 > th dose independent rect. 6 19
833 48.20 wind 7.0 10 < th dose independent rect. 3 6
849 48.26 temperature 10.0 90 > th dose dependent rect. 21 6
880 48.32 wind 9.0 10 < th dose dependent rect. 22 5
896 48.35 temperature 10.0 270 > th dose dependent rect. 1 19
909 48.40 temperature 10.0 10 > th dose independent rect. 3 6
911 48.40 temperature 30.0 10 < th dose independent rect. 3 6
912 48.40 humidity 50.0 10 > th dose independent rect. 3 6
914 48.40 atmosphere 995.0 10 > th dose independent rect. 3 6
915 48.40 atmosphere 1015.0 10 < th dose independent rect. 3 6
919 48.40 temperature 10.0 10 > th dose independent rect. 9 18
928 48.43 atmosphere 995.0 270 > th dose independent rect. 11 9
975 48.48 humidity 50.0 270 > th dose dependent rect. 2 3
977 48.49 radiation 1.0 270 < th dose independent sin 3 NA
989 48.50 radiation 30.0 90 < th dose dependent rect. 3 14
993 48.51 humidity 50.0 270 > th dose independent rect. 6 19