Os07g0409100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CLB1.
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Os07g0409100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CLB1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.41 | 0.19 | 12.7 | -0.334 | 0.24 | 0.284 | 0.268 | -1.14 | 0.122 | 0.176 | 18.55 | 2645 | -- | -- |
| 17.36 | 0.194 | 12.7 | -0.0516 | 0.256 | 0.289 | 0.181 | -- | 0.185 | 0.157 | 16.65 | 7038 | -- | -- |
| 16.6 | 0.19 | 12.7 | -0.319 | 0.262 | 0.3 | -- | -1.18 | 0.126 | 0.396 | 18.07 | 1720 | -- | -- |
| 17.46 | 0.195 | 12.7 | -0.0734 | 0.259 | 0.322 | -- | -- | 0.186 | 0.0413 | 14.74 | 7040 | -- | -- |
| 20.04 | 0.209 | 12.7 | -0.348 | -- | 0.359 | -- | -1.1 | 0.111 | -- | 19.06 | 2458 | -- | -- |
| 19.3 | 0.206 | 12.7 | 0.1 | 0.267 | -- | 0.212 | -- | 0.27 | 0.231 | -- | -- | -- | -- |
| 19.5 | 0.207 | 12.7 | 0.0922 | 0.266 | -- | -- | -- | 0.269 | 0.192 | -- | -- | -- | -- |
| 21.09 | 0.214 | 12.7 | -0.0343 | -- | 0.348 | -- | -- | 0.197 | -- | 17.21 | 2439 | -- | -- |
| 17.58 | 0.195 | 12.7 | -- | 0.252 | 0.285 | -- | -- | 0.197 | 0.0675 | 14.78 | 6989 | -- | -- |
| 23.96 | 0.229 | 12.7 | 0.101 | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
| 19.72 | 0.208 | 12.7 | -- | 0.268 | -- | -- | -- | 0.259 | 0.211 | -- | -- | -- | -- |
| 20.45 | 0.211 | 12.7 | -- | -- | 0.429 | -- | -- | 0.201 | -- | 15.7 | 999 | -- | -- |
| 24.23 | 0.23 | 12.7 | -- | -- | -- | -- | -- | 0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.18 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 2 | 15.19 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 7 | 15.21 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 12 | 15.24 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 47 | 15.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 71 | 15.46 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 76 | 15.47 | humidity | 90 | 14400 | < th | dose independent | sin | 12 | NA |
| 96 | 15.51 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 130 | 15.57 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 138 | 15.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 140 | 15.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 145 | 15.58 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 314 | 15.75 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 380 | 15.81 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 397 | 15.82 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 405 | 15.82 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 429 | 15.84 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 441 | 15.85 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 456 | 15.86 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 474 | 15.87 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 481 | 15.87 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 493 | 15.88 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 558 | 15.91 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 596 | 15.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 637 | 15.95 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 639 | 15.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 641 | 15.95 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 10 |
| 647 | 15.96 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 655 | 15.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 671 | 15.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 685 | 15.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 714 | 15.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 717 | 15.98 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 731 | 15.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 773 | 16.00 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 783 | 16.00 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 787 | 16.01 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 790 | 16.01 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 818 | 16.01 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 827 | 16.02 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 856 | 16.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 860 | 16.03 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 864 | 16.03 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 883 | 16.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 893 | 16.04 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 916 | 16.04 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 930 | 16.05 | wind | 3 | 43200 | > th | dose independent | sin | 2 | NA |
| 961 | 16.06 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 964 | 16.06 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 967 | 16.06 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 970 | 16.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 975 | 16.06 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 976 | 16.06 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 981 | 16.06 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 995 | 16.07 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |