BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0240300 Os07g0240300|AK072205
(443 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0240300 Conserved hypothetical protein 647 0.0
Os04g0524400 Conserved hypothetical protein 426 e-119
AK110446 211 1e-54
Os01g0957200 Conserved hypothetical protein 120 2e-27
Os03g0390900 Conserved hypothetical protein 116 4e-26
Os05g0388600 Conserved hypothetical protein 102 5e-22
Os01g0812900 Conserved hypothetical protein 92 9e-19
Os01g0826900 Protein of unknown function DUF399 family protein 88 1e-17
>Os07g0240300 Conserved hypothetical protein
Length = 443
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/443 (76%), Positives = 338/443 (76%)
Query: 1 MSMAFSCAGARLQQXXXXXXXXXXXXXXXXXXXXXXXXXXCLYPXXXXXXXXXXXXAELP 60
MSMAFSCAGARLQQ CLYP AELP
Sbjct: 1 MSMAFSCAGARLQQGRVGVGKCRGGGGGGGGAAVVRRSGCCLYPGGRRGLGVRGIRAELP 60
Query: 61 PRACADXXXXXXXXXXXXXXPDAGEVADHVKEVGAVAPPSVLPKGERGEVADVDXXXXXX 120
PRACAD PDAGEVADHVKEVGAVAPPSVLPKGERGEVADVD
Sbjct: 61 PRACADGGGGATTSGSTVAVPDAGEVADHVKEVGAVAPPSVLPKGERGEVADVDGSGGNG 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFGPILSFDQVVQEVEKRGVSLPSLPADM 180
EFGPILSFDQVVQEVEKRGVSLPSLPADM
Sbjct: 121 KLPSSGGGGDGDNGGGGGGGDGGDGGDEGDDEFGPILSFDQVVQEVEKRGVSLPSLPADM 180
Query: 181 IEAAKSVGIQKLLLLRYLDMQASAWPLGPAIRSCSLLRNRMLVDPSFLFKIGTEIVIDTC 240
IEAAKSVGIQKLLLLRYLDMQASAWPLGPAIRSCSLLRNRMLVDPSFLFKIGTEIVIDTC
Sbjct: 181 IEAAKSVGIQKLLLLRYLDMQASAWPLGPAIRSCSLLRNRMLVDPSFLFKIGTEIVIDTC 240
Query: 241 CATFAEVQKRGEEFWSEFELYAADXXXXXXXXXXXXXXXXPYARFGGGSASPGLLGRVRH 300
CATFAEVQKRGEEFWSEFELYAAD PYARFGGGSASPGLLGRVRH
Sbjct: 241 CATFAEVQKRGEEFWSEFELYAADMLVGVVVNVALVGMLAPYARFGGGSASPGLLGRVRH 300
Query: 301 AYDSLPSSVFEAERPGYSFSIQQRIGTYFFKGILYGTVGFFCGLVGQGIANLIMTAKRSV 360
AYDSLPSSVFEAERPGYSFSIQQRIGTYFFKGILYGTVGFFCGLVGQGIANLIMTAKRSV
Sbjct: 301 AYDSLPSSVFEAERPGYSFSIQQRIGTYFFKGILYGTVGFFCGLVGQGIANLIMTAKRSV 360
Query: 361 KKSDDDVPVPPLLKTSALWGAFLGVSSNTRYQIINGLERVVEASPVAKRVPAVSLAFTVG 420
KKSDDDVPVPPLLKTSALWGAFLGVSSNTRYQIINGLERVVEASPVAKRVPAVSLAFTVG
Sbjct: 361 KKSDDDVPVPPLLKTSALWGAFLGVSSNTRYQIINGLERVVEASPVAKRVPAVSLAFTVG 420
Query: 421 VRFANNIYGGMQFVDWARMTGCQ 443
VRFANNIYGGMQFVDWARMTGCQ
Sbjct: 421 VRFANNIYGGMQFVDWARMTGCQ 443
>Os04g0524400 Conserved hypothetical protein
Length = 399
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/292 (69%), Positives = 237/292 (81%), Gaps = 3/292 (1%)
Query: 152 EFGPILSFDQVVQEVEKRGVSLPSLPADMIEAAKSVGIQKLLLLRYLDMQASAWPLGPAI 211
EFGP+L FD+V++ RGVSLP ADM+EAAK GI+++LLLRY D+QA WPL I
Sbjct: 111 EFGPLLGFDEVLRLAAARGVSLP---ADMMEAAKDAGIREVLLLRYFDLQAGPWPLAAMI 167
Query: 212 RSCSLLRNRMLVDPSFLFKIGTEIVIDTCCATFAEVQKRGEEFWSEFELYAADXXXXXXX 271
R+ S+LRNRML DPSFLFK+GTE+VID+CCATFAEVQKRGE+FW+EFELYAAD
Sbjct: 168 RAFSMLRNRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGEDFWAEFELYAADLLVGVVV 227
Query: 272 XXXXXXXXXPYARFGGGSASPGLLGRVRHAYDSLPSSVFEAERPGYSFSIQQRIGTYFFK 331
PY RFG SAS G GR SLPSSVFEAERPG F++QQRIGT+F+K
Sbjct: 228 DIALVGLLAPYVRFGKASASTGPFGRFNRMAGSLPSSVFEAERPGCRFTVQQRIGTFFYK 287
Query: 332 GILYGTVGFFCGLVGQGIANLIMTAKRSVKKSDDDVPVPPLLKTSALWGAFLGVSSNTRY 391
G+LYG+VGF CG++GQGIAN+IMTAKRSVKKSD+D+PVPPL+K++ALWG FL VSSNTRY
Sbjct: 288 GVLYGSVGFVCGIIGQGIANMIMTAKRSVKKSDEDIPVPPLIKSAALWGVFLAVSSNTRY 347
Query: 392 QIINGLERVVEASPVAKRVPAVSLAFTVGVRFANNIYGGMQFVDWARMTGCQ 443
QIINGLERVVE SP+AKRVP V++AFTVGVRFANNIYGGMQFVDWAR +G Q
Sbjct: 348 QIINGLERVVETSPIAKRVPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ 399
>AK110446
Length = 413
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 161/272 (59%), Gaps = 9/272 (3%)
Query: 176 LPADMIEAAKSVGIQKLLLLRYLDMQASAWPLGPAIRSCSLLRNRMLVDPSFLFKIGTEI 235
LPADM+E AKS GI+ L +Y+ +Q+ + G ++ +R+RM+ D FL K+ E+
Sbjct: 147 LPADMLETAKSYGIRSTALAKYISLQSLVFT-GGLVQRFPWIRDRMIADEKFLLKVVAEV 205
Query: 236 VIDTCCATFAEVQKRGEEFWSEFELYAADXXXXXXXXXXXXXXXXPYARFGGGSASPGLL 295
+ID+ CAT AEV+KRG+EFW EFE Y +D P A GG +A LL
Sbjct: 206 LIDSGCATVAEVRKRGDEFWQEFEFYLSDLLVGCVLDVVLVSLMAPRAVLGGKAA---LL 262
Query: 296 GR--VRHAYDSLPSSVFEAERPGYS-FSIQQRIGTYFFKGILYGTVGFFCGLVGQGIANL 352
G+ ++ +PS+ EA G +++ R K + Y G CG +GQGIAN
Sbjct: 263 GQSALQKCLGGIPSAALEASVKGVKQYTLGSRFACLGVKFLEYSLAGITCGFIGQGIANS 322
Query: 353 IMTAKRSVK-KSDDDVPVPPLLKTSALWGAFLGVSSNTRYQIINGLERVVEASPVAKRVP 411
+M KR + + +DDV VPPL +T+ +WG F+GVSSN RYQ + GLER V+ + +AKRVP
Sbjct: 323 LMMLKRQIHGEKEDDVAVPPLFRTALVWGLFMGVSSNLRYQAVFGLERAVDLT-IAKRVP 381
Query: 412 AVSLAFTVGVRFANNIYGGMQFVDWARMTGCQ 443
A++ TV +RF NN+ GG F+D AR G Q
Sbjct: 382 AIAYGTTVAIRFINNVIGGENFIDMARWAGVQ 413
>Os01g0957200 Conserved hypothetical protein
Length = 389
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 131/280 (46%), Gaps = 15/280 (5%)
Query: 170 GVSLPSLPADMIEAAKSVGIQKLLLLRYLDMQASA---WPLGPAIRSCSLLRNRMLVDPS 226
G L SLP+D+ A + + ++ R+ +M+ SA W L R R+L D
Sbjct: 113 GRKLESLPSDLAAAVEGGRVTGEIVRRFAEMEGSALLRWLL-----QFQGFRERLLADDL 167
Query: 227 FLFKIGTEIVIDTCCATFAEVQKRGEEFWSEFELYAADXXXXXXXXXXXXXXXXPYARFG 286
FL K+ E + T AE +KR E F E ++ AD P
Sbjct: 168 FLAKLAMECGVGVIAKTAAEYEKRRENFVKEIDIVIADVVMAIVADFMLVYLPAPTVSLQ 227
Query: 287 GGSASPGLLGRVRHAYDSLPSSVFEAERPGYSFSIQQRIGTYFFKGILYGTVGFFCGLVG 346
A+ G + + + + P + F+ G S+SI QR+G G TVG L+G
Sbjct: 228 PPLATNA--GHIANFFHNCPDNAFQIALAGRSYSILQRLGAILRNGAKLFTVGTSASLIG 285
Query: 347 QGIANLIMTAKRSVKKS-DDDVPVPPLLKTSALWGAFLGVSSNTRYQIINGL--ERVVEA 403
G+ N ++ A+++V K DD+V P+L TS +G ++ VSSN RYQI+ G+ +R++E
Sbjct: 286 TGVTNALIKARKAVDKELDDEVEDIPVLSTSVAYGVYMAVSSNLRYQILAGVIEQRMLE- 344
Query: 404 SPVAKRVPAVSLAFTVGVRFANNIYGGMQFVDWARMTGCQ 443
P+ + A VR N G + +VD+AR G Q
Sbjct: 345 -PLLHNHKLLLSALCFAVRTGNTFLGSLLWVDYARWVGVQ 383
>Os03g0390900 Conserved hypothetical protein
Length = 87
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 71/93 (76%), Gaps = 10/93 (10%)
Query: 169 RGVSLPSLPADMIEAAKSVGIQKLLLLRYLDMQASAWPLGPAIRSCSLLRNRMLVDPSFL 228
RGVSLP ADM EAAK GI ++LLLRY D+QA+ WPL IR+ S+L NRML DPSFL
Sbjct: 3 RGVSLP---ADM-EAAKDAGIWEVLLLRYFDLQAAPWPLAAMIRAFSMLHNRMLADPSFL 58
Query: 229 FKIGTEIVIDTCCATFAEVQKRGEEFWSEFELY 261
FK+GTE+VID+ CATFA E+FW+EFELY
Sbjct: 59 FKVGTEVVIDSRCATFA------EDFWAEFELY 85
>Os05g0388600 Conserved hypothetical protein
Length = 378
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 127/283 (44%), Gaps = 21/283 (7%)
Query: 170 GVSLPSLPADMIEAAKSVGIQKLLLLRYLDMQASAWPLGPAIRSCSLLRNRMLVDPSFLF 229
G L SLPAD+ A + + ++ R+ D++ S L + + R+L D FL
Sbjct: 108 GRKLESLPADLAAAIEGGRVPGEIVQRFADLEKSG--LFRWLLQFGGFKERLLADDLFLA 165
Query: 230 KIGTEIVIDTCCATFAEVQKRGEEFWSEFELYAADXXXXXXXXXXXXXXXXPYARFGGGS 289
K+ E + T AE ++R E F E + AD P S
Sbjct: 166 KVAMECGVGIFTKTAAEYERRRENFVKELDFVIADVVMAIVADFMLVWLPAPTV-----S 220
Query: 290 ASPGLL---GRVRHAYDSLPSSVFEAERPGYSFSIQQRIGTYFFKGILYGTVGFFCGLVG 346
P L G + + + P + F+ G S+S+ QR+G G VG L+G
Sbjct: 221 LQPPLAVNAGSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFAVGTSASLIG 280
Query: 347 QGIANLIMTAKRSVKK----SDDDVPVPPLLKTSALWGAFLGVSSNTRYQIINGL--ERV 400
G+ N ++ A+++V K +D+P+ + TS +G ++ VSSN RYQI+ G+ +R+
Sbjct: 281 TGVTNALIKARKAVSKDFEGESEDIPI---VSTSVAYGVYMAVSSNLRYQILAGVIEQRM 337
Query: 401 VEASPVAKRVPAVSLAFTVGVRFANNIYGGMQFVDWARMTGCQ 443
+E P+ V A VR N G + +VD+A+ G Q
Sbjct: 338 LE--PLLHHHKLVLSALCFAVRTGNTFLGSLLWVDYAKWIGIQ 378
>Os01g0812900 Conserved hypothetical protein
Length = 348
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 76/141 (53%), Gaps = 11/141 (7%)
Query: 305 LPSSVFEAERPGYSFSIQQRIGTYFFKGILYGTVGFFCGLVGQGIAN-LIMTAKRSVKKS 363
LPS +FEA ++S+ R+ T KG + VGF GL G I+N LI KR
Sbjct: 178 LPSHMFEAG----AYSLGSRVATLLSKGATFAAVGFAAGLAGTAISNGLISLRKRMDPAF 233
Query: 364 DDDVPVPPLLKTSALWGAFLGVSSNTRYQIINGLERVV-EASPVAKRVPAVSLAFTVGVR 422
+ PP L +A W +GVSSN RYQ +NG+E ++ A+P P+V V +R
Sbjct: 234 ETPNKAPPTLLNAATWAIHMGVSSNLRYQTLNGVEYLLANAAP-----PSVFKVSVVALR 288
Query: 423 FANNIYGGMQFVDWARMTGCQ 443
NN+ GGM FV AR+TG Q
Sbjct: 289 CINNVLGGMSFVLLARLTGSQ 309
>Os01g0826900 Protein of unknown function DUF399 family protein
Length = 723
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 12/278 (4%)
Query: 175 SLPADMIEAAKSVGIQKLLLLRYLDMQASAWP-LGPAIRSCSLLRNRMLVDPSFLFKIGT 233
+LP D+ + + +L + D++ +P + I R R+L DP FL ++
Sbjct: 409 ALPQDLQKGIDLGVVSPEILQNFFDLEK--YPVMAELIHRFQGFRERLLADPKFLHRLAI 466
Query: 234 EIVIDTCCATFAEVQKRGEEFWSEFELYAADXXXXXXXXXXXXXXXXPYARFG--GGSAS 291
E I A+ +KR F E + D P G + S
Sbjct: 467 EEGISITTTLIAQYEKRKGRFLEEIDYVLTDTIRGSVVDFFTVWLPAPTISLLSLGDNGS 526
Query: 292 PGLLGRVRHAYDSLPSSVFEAERPGYSFSIQQRIGTYFFKGILYGTVGFFCGLVGQGIAN 351
L ++ SLP + F+ G S++ QR + GI VGF +G G+A+
Sbjct: 527 GESLELLKGLLGSLPDNAFQKGIMGQSWNTNQRFASVLMGGIKLAGVGFISS-IGAGVAS 585
Query: 352 LIMTAKRSVKKSDDDVPV----PPLLKTSALWGAFLGVSSNTRYQIINGL--ERVVEASP 405
++ A R V + V P+ K++ ++ FLG S+N RYQ+I GL R+ E
Sbjct: 586 DVLYAARRVLRPSTSVETARRRTPIWKSATVYSCFLGTSANLRYQVIAGLVEHRLGEYLM 645
Query: 406 VAKRVPAVSLAFTVGVRFANNIYGGMQFVDWARMTGCQ 443
P ++ + R N+ +G Q++D AR TG Q
Sbjct: 646 AYYNQPLLANLLSFVSRTINSYWGTQQWIDLARATGLQ 683
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,671,282
Number of extensions: 402694
Number of successful extensions: 879
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 8
Length of query: 443
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 339
Effective length of database: 11,605,545
Effective search space: 3934279755
Effective search space used: 3934279755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)