BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0227400 Os07g0227400|AK069634
(286 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0227400 Similar to RNA binding/signal transduction pro... 536 e-153
Os03g0815700 KH domain containing protein 439 e-123
Os05g0481500 KH domain containing protein 382 e-106
Os01g0818300 KH domain containing protein 337 4e-93
Os01g0886300 KH domain containing protein 298 4e-81
Os05g0419500 KH domain containing protein 266 1e-71
Os04g0385700 KH domain containing protein 105 5e-23
Os02g0722700 Conserved hypothetical protein 79 3e-15
>Os07g0227400 Similar to RNA binding/signal transduction protein QkI-4
Length = 286
Score = 536 bits (1381), Expect = e-153, Method: Compositional matrix adjust.
Identities = 263/286 (91%), Positives = 263/286 (91%)
Query: 1 MSGGLYNHQGFSPARTLSPQIRSNPEADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEI 60
MSGGLYNHQGFSPARTLSPQIRSNPEADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEI
Sbjct: 1 MSGGLYNHQGFSPARTLSPQIRSNPEADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEI 60
Query: 61 MRVSSMVNDHGFNDFDXXXXXXXXXXXXXXXXXNLHGNGFGPWNGIHQERLGFXXXXXXG 120
MRVSSMVNDHGFNDFD NLHGNGFGPWNGIHQERLGF G
Sbjct: 61 MRVSSMVNDHGFNDFDRRRYRSPSPMSSPIMRPNLHGNGFGPWNGIHQERLGFPPPPPPG 120
Query: 121 TSMDWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFI 180
TSMDWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFI
Sbjct: 121 TSMDWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFI 180
Query: 181 RGKGSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVD 240
RGKGSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVD
Sbjct: 181 RGKGSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVD 240
Query: 241 ESQDYYKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAKPSH 286
ESQDYYKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAKPSH
Sbjct: 241 ESQDYYKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAKPSH 286
>Os03g0815700 KH domain containing protein
Length = 281
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/281 (77%), Positives = 241/281 (85%), Gaps = 6/281 (2%)
Query: 4 GLYNHQGFSPARTLSPQIRSNP-EADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEIMR 62
GLY+ GFSPAR LSPQIRSNP + DSQYL+ELLAEH KLGPFMQVLPICS+LL+QEIMR
Sbjct: 3 GLYS-PGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIMR 61
Query: 63 VSSMVNDHGFNDFDXXXXXXXXXXXXXXXXXNLHGNGFGPWNGIHQERLGFXXXXXXGTS 122
VSS+V++HGF DFD N GNGF PWNG+HQERLGF GTS
Sbjct: 62 VSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQERLGFPQ----GTS 117
Query: 123 MDWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRG 182
MDWQGAPPS S++VKKI+R++VPVD+YPNFNFVGRILGPRGNSLKRVEASTGCRVFIRG
Sbjct: 118 MDWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRG 177
Query: 183 KGSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDES 242
KGSIKD KE+KL+GKPGYEHL+DPLHILIEAE PA+IID RLR AQE+++ELLKPVDES
Sbjct: 178 KGSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDES 237
Query: 243 QDYYKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAK 283
QD+YKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAK
Sbjct: 238 QDFYKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAK 278
>Os05g0481500 KH domain containing protein
Length = 282
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/285 (68%), Positives = 218/285 (76%), Gaps = 11/285 (3%)
Query: 4 GLYNHQG-FSPARTLSPQIRSN--PEADS--QYLSELLAEHHKLGPFMQVLPICSRLLNQ 58
GL+ G FSP R +SPQ+R P+A S QYL+ELL EH KLGPFMQVLPICSRLLNQ
Sbjct: 3 GLHGTDGCFSPGRAMSPQVRPPVPPDAASGGQYLAELLQEHQKLGPFMQVLPICSRLLNQ 62
Query: 59 EIMRVSSMVNDHGFNDFDXXXXXXXXXXXXXXXXXNLHGNGFGPWNGIHQERLGFXXXXX 118
EIMRVS M G DF+ N GN FGPWNG+ ER+ F
Sbjct: 63 EIMRVSGMFRQPGVGDFERSQPASPNQMHPSHIVPNFCGNAFGPWNGMRPERVSFS---- 118
Query: 119 XGTSMDWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRV 178
WQGAP S SYIVKKI+R+E+P DAYPNFNF+GR+LGPRGNSLKR+EASTGCRV
Sbjct: 119 --QGPGWQGAPQSPSSYIVKKILRLEIPTDAYPNFNFIGRLLGPRGNSLKRIEASTGCRV 176
Query: 179 FIRGKGSIKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKP 238
FIRGKGSIKD +KEE+LKG+ GYEHL+DPLHILIEAELPAN+ID RL +AQEI++ELLKP
Sbjct: 177 FIRGKGSIKDPNKEEQLKGRAGYEHLDDPLHILIEAELPANVIDARLAKAQEILEELLKP 236
Query: 239 VDESQDYYKRQQLRELAMLNSTLREDSPHPGSVSPFSNGGMKRAK 283
VDESQDYYKRQQLRELA+LNS LRE+SPHPGS SPFSNGGMKR K
Sbjct: 237 VDESQDYYKRQQLRELALLNSPLREESPHPGSASPFSNGGMKRMK 281
>Os01g0818300 KH domain containing protein
Length = 283
Score = 337 bits (865), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 177/279 (63%), Positives = 207/279 (74%), Gaps = 13/279 (4%)
Query: 11 FSPARTLSP----QIRSNPEADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEIMRVSSM 66
FSPAR +SP + +P A QYL+ELL E K+GPF+QVLPIC RLLNQEIMR+S++
Sbjct: 11 FSPARAMSPLPLVRPPPSPGAAGQYLAELLQEQQKIGPFVQVLPICGRLLNQEIMRMSAI 70
Query: 67 VNDHGFNDFDXXXXXXXXXXXXXXXXXNLHGNGFGPWNGIHQERLGFXXXXXXGTSMDWQ 126
V+ G + D N GNGF PW G E+ GF +M W+
Sbjct: 71 VSHLGVREHDRLPIASPNQMHPLPQVPNFCGNGFNPWTGTLPEKNGFPRG-----TMGWE 125
Query: 127 GAPPSHG-SYIVKKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGS 185
GA +H SYIVKKIVR+EVP DAYP+FNF+GR+LGPRGNSLKRVEASTGCRVFIRGKGS
Sbjct: 126 GA--AHDPSYIVKKIVRLEVPTDAYPHFNFIGRLLGPRGNSLKRVEASTGCRVFIRGKGS 183
Query: 186 IKDADKEEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDESQDY 245
IKD KEE+LKG+PGYEHL+DP HILIEAELPA++IDTRL QAQEI+++LLKPV+ESQD+
Sbjct: 184 IKDPIKEEQLKGRPGYEHLSDPTHILIEAELPADVIDTRLAQAQEILEDLLKPVEESQDF 243
Query: 246 YKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAK 283
KRQQLRELA+LNST REDSPH GS SPFSNG K K
Sbjct: 244 LKRQQLRELAVLNSTYREDSPHQNGSASPFSNGSTKLGK 282
>Os01g0886300 KH domain containing protein
Length = 290
Score = 298 bits (762), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 151/269 (56%), Positives = 192/269 (71%), Gaps = 15/269 (5%)
Query: 21 IRSNPEADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEIMRVSSMVNDHGFND---FDX 77
+R + +YL+ELLAE KL PF+QVLP C+RLLNQEI+R SS+ +H F D +
Sbjct: 28 LRYSSSERERYLAELLAERQKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEH 87
Query: 78 XXXXXXXXXXXXXXXXNLHGNGFGPWNGIHQERLGFXXXXXXGTSMDWQGAPPSHGSYIV 137
+L G W+G+ E + +SM W G P G+ +V
Sbjct: 88 GSPLRLPGLPVNGQPMDLEG-----WSGMQTENMRVLQ----ASSMGWNGPPAITGTPVV 138
Query: 138 KKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDADKEEKLKG 197
KK+VR++VPVD YPN+NFVGR+LGPRGNSLKRVEAST CRV+IRG+GS+KD+ KE+KL+
Sbjct: 139 KKVVRLDVPVDKYPNYNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRD 198
Query: 198 KPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDESQDYYKRQQLRELAML 257
KPGYEHLN+PLH+L+EAE PA+IIDTRL QA I+++LLKP+DES DYYK+QQLRELA+L
Sbjct: 199 KPGYEHLNEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAIL 258
Query: 258 NSTLREDSPHP---GSVSPFSNGGMKRAK 283
N TLRE+SP P SVSPF++ GMKRAK
Sbjct: 259 NGTLREESPSPHLSPSVSPFNSTGMKRAK 287
>Os05g0419500 KH domain containing protein
Length = 291
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/247 (55%), Positives = 174/247 (70%), Gaps = 13/247 (5%)
Query: 21 IRSNPEADSQYLSELLAEHHKLGPFMQVLPICSRLLNQEIMRVSSMVNDHGFND---FDX 77
+RS +YL+ELLAE KL PFMQVLP C+RLLNQEI+R SS+ + F + +
Sbjct: 28 LRSPASERERYLAELLAERQKLAPFMQVLPFCNRLLNQEILRASSLPPNPNFVEPERVNH 87
Query: 78 XXXXXXXXXXXXXXXXNLHGNGFGPWNGIHQERLGFXXXXXXGTSMDWQGAPPSHGSYIV 137
+L G W+G+ E +G SM W AP GS +V
Sbjct: 88 GSPLRLTGHPMNGQPMDLEG-----WSGMQTE-MGVLQ----SPSMGWNVAPGVAGSPVV 137
Query: 138 KKIVRMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDADKEEKLKG 197
KK+VR++VPVD YPN+NFVGR+LGPRGNSLKRVEA+T CRV+IRG+GS+KD+ KE+KL+
Sbjct: 138 KKVVRIDVPVDKYPNYNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEDKLRD 197
Query: 198 KPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDESQDYYKRQQLRELAML 257
KPGYEHLNDPLH+L+EAE P++I+D RL QA I+++LLKPVDES DYYK+QQLRELA+L
Sbjct: 198 KPGYEHLNDPLHVLVEAEFPSDIVDVRLNQAVAILEDLLKPVDESMDYYKKQQLRELAIL 257
Query: 258 NSTLRED 264
N TLRE+
Sbjct: 258 NGTLREE 264
>Os04g0385700 KH domain containing protein
Length = 231
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 82/124 (66%), Gaps = 6/124 (4%)
Query: 142 RMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDADKEEKLKGKPGY 201
++ +P+ +P +NF+G I+GPRGN+ KR+E TG ++ IRGKGS+K+ +K KP
Sbjct: 98 KLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDP 157
Query: 202 EHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDESQDYYKRQQLRELAMLNSTL 261
N+ LH+L+EAE L A ++++LL PVDE + +KRQQLRELA LN+T+
Sbjct: 158 SE-NEDLHVLVEAE-----TQEALDAAAGMVEKLLTPVDEVLNEHKRQQLRELAALNATI 211
Query: 262 REDS 265
R+D
Sbjct: 212 RDDE 215
>Os02g0722700 Conserved hypothetical protein
Length = 52
Score = 79.3 bits (194), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/48 (70%), Positives = 44/48 (91%)
Query: 192 EEKLKGKPGYEHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPV 239
E+ ++GKPGYEHLN+PLHIL+EAELP IIDTRL QA++I+++LLKPV
Sbjct: 1 EDMMRGKPGYEHLNEPLHILVEAELPVEIIDTRLIQARDILEDLLKPV 48
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,822,926
Number of extensions: 389445
Number of successful extensions: 817
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 8
Length of query: 286
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 186
Effective length of database: 11,814,401
Effective search space: 2197478586
Effective search space used: 2197478586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)