Os01g0886300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KH domain containing protein.
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Os01g0886300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.62 | 0.247 | 10.8 | -0.205 | 1.35 | 0.61 | -0.765 | 0.277 | -0.0522 | 10.4 | 0.85 | 35 | -- | -- |
| 27.71 | 0.245 | 10.9 | -0.219 | 1.34 | 0.62 | -0.454 | -- | -0.0593 | 10.4 | 0.85 | 35 | -- | -- |
| 28.25 | 0.248 | 10.9 | -0.227 | 1.32 | 0.661 | -- | -0.138 | -0.0553 | 10.3 | 0.8 | 35 | -- | -- |
| 28.54 | 0.249 | 10.9 | -0.24 | 1.34 | 0.619 | -- | -- | -0.0558 | 10.4 | 0.85 | 34 | -- | -- |
| 58.88 | 0.359 | 10.9 | -0.307 | -- | 1.44 | -- | -0.476 | -0.0707 | -- | 0.8 | 26 | -- | -- |
| 35.78 | 0.28 | 10.8 | -0.189 | 2.03 | -- | -0.418 | -- | -0.0337 | 10.9 | -- | -- | -- | -- |
| 36.52 | 0.283 | 10.8 | -0.206 | 2.03 | -- | -- | -- | -0.035 | 10.9 | -- | -- | -- | -- |
| 59.31 | 0.359 | 10.9 | -0.272 | -- | 1.46 | -- | -- | -0.0552 | -- | 0.7988 | 17 | -- | -- |
| 30.04 | 0.255 | 10.8 | -- | 1.35 | 0.608 | -- | -- | -0.0274 | 10.5 | 0.8664 | 34 | -- | -- |
| 293.29 | 0.8 | 10.9 | -0.25 | -- | -- | -- | -- | -0.0495 | -- | -- | -- | -- | -- |
| 37.64 | 0.287 | 10.8 | -- | 2.03 | -- | -- | -- | -0.012 | 10.9 | -- | -- | -- | -- |
| 61.56 | 0.365 | 10.9 | -- | -- | 1.45 | -- | -- | -0.0392 | -- | 0.7963 | 17 | -- | -- |
| 294.95 | 0.802 | 10.9 | -- | -- | -- | -- | -- | -0.0217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.61 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 2 | 26.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 12 |
| 3 | 26.28 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 12 |
| 4 | 26.36 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 6 | 26.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 11 |
| 20 | 27.12 | radiation | 1 | 90 | < th | dose independent | rect. | 13 | 15 |
| 28 | 27.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 4 |
| 30 | 27.22 | radiation | 10 | 90 | < th | dose dependent | rect. | 13 | 15 |
| 40 | 27.31 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 54 | 27.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 65 | 27.56 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 75 | 27.68 | radiation | 1 | 10 | < th | dose dependent | rect. | 7 | 22 |
| 92 | 27.77 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 16 |
| 106 | 27.84 | temperature | 20 | 30 | > th | dose dependent | sin | 16 | NA |
| 116 | 27.89 | radiation | 1 | 10 | < th | dose dependent | rect. | 15 | 14 |
| 118 | 27.90 | radiation | 1 | 30 | < th | dose dependent | no | NA | NA |
| 119 | 27.90 | radiation | 1 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 125 | 27.90 | radiation | 1 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 126 | 27.90 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 127 | 27.91 | radiation | 1 | 30 | > th | dose independent | no | NA | NA |
| 128 | 27.91 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 14 |
| 184 | 27.91 | radiation | 1 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 192 | 27.92 | radiation | 1 | 30 | < th | dose independent | no | NA | NA |
| 193 | 27.92 | radiation | 1 | 30 | < th | dose independent | rect. | 11 | 21 |
| 199 | 27.92 | radiation | 1 | 30 | < th | dose independent | rect. | 13 | 23 |
| 200 | 27.92 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 23 |
| 224 | 27.92 | radiation | 1 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 225 | 27.93 | radiation | 1 | 30 | < th | dose independent | rect. | 13 | 19 |
| 233 | 27.93 | radiation | 1 | 30 | < th | dose independent | rect. | 17 | 23 |
| 250 | 27.98 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 11 |
| 259 | 28.00 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 272 | 28.01 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 21 |
| 276 | 28.02 | radiation | 1 | 30 | > th | dose independent | sin | 14 | NA |
| 277 | 28.02 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 4 |
| 278 | 28.02 | radiation | 1 | 30 | < th | dose independent | rect. | 15 | 17 |
| 308 | 28.04 | radiation | 1 | 30 | < th | dose independent | sin | 13 | NA |
| 318 | 28.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 342 | 28.18 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 11 |
| 396 | 28.26 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 11 |
| 402 | 28.28 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 1 |
| 410 | 28.31 | radiation | 1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 425 | 28.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 426 | 28.33 | radiation | 1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 539 | 28.41 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 13 |
| 548 | 28.43 | radiation | 10 | 10 | < th | dose dependent | sin | 13 | NA |
| 557 | 28.44 | humidity | 60 | 90 | > th | dose independent | rect. | 17 | 11 |
| 565 | 28.46 | radiation | 1 | 30 | < th | dose independent | rect. | 19 | 23 |
| 567 | 28.46 | radiation | 10 | 90 | < th | dose dependent | sin | 14 | NA |
| 644 | 28.54 | radiation | 1 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 649 | 28.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 666 | 28.59 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 12 |
| 667 | 28.59 | radiation | 1 | 30 | < th | dose independent | rect. | 23 | 23 |
| 691 | 28.63 | radiation | 1 | 30 | > th | dose independent | rect. | 7 | 23 |
| 702 | 28.65 | radiation | 1 | 30 | > th | dose independent | rect. | 9 | 23 |
| 711 | 28.67 | radiation | 1 | 30 | > th | dose independent | rect. | 11 | 23 |
| 725 | 28.70 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 11 |
| 740 | 28.72 | radiation | 20 | 720 | < th | dose independent | rect. | 15 | 4 |
| 753 | 28.72 | radiation | 1 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 788 | 28.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 12 |
| 817 | 28.83 | radiation | 10 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 835 | 28.86 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 9 |
| 862 | 28.88 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 883 | 28.90 | temperature | 25 | 30 | < th | dose independent | rect. | 13 | 15 |
| 925 | 28.97 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 926 | 28.97 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 6 |
| 951 | 29.00 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 962 | 29.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 14 |
| 969 | 29.02 | radiation | 40 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 979 | 29.04 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 7 |
| 983 | 29.04 | radiation | 1 | 30 | > th | dose independent | rect. | 14 | 16 |
| 987 | 29.05 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 991 | 29.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 17 |