BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0886300 Os01g0886300|AK065093
(290 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0886300 KH domain containing protein 440 e-124
Os05g0419500 KH domain containing protein 374 e-104
Os07g0227400 Similar to RNA binding/signal transduction pro... 250 9e-67
Os03g0815700 KH domain containing protein 250 9e-67
Os05g0481500 KH domain containing protein 227 1e-59
Os01g0818300 KH domain containing protein 218 3e-57
Os04g0385700 KH domain containing protein 99 4e-21
Os02g0722700 Conserved hypothetical protein 78 1e-14
>Os01g0886300 KH domain containing protein
Length = 290
Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/244 (88%), Positives = 217/244 (88%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRLPGLPVNGQPMDLE 106
QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRLPGLPVNGQPMDLE
Sbjct: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRLPGLPVNGQPMDLE 106
Query: 107 GWSGMQTENMRVLQASSMGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNFVGRLLGPRGN 166
GWSGMQTENMRVLQASSMGWNGPPAITGT YPNYNFVGRLLGPRGN
Sbjct: 107 GWSGMQTENMRVLQASSMGWNGPPAITGTPVVKKVVRLDVPVDKYPNYNFVGRLLGPRGN 166
Query: 167 SLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDTRL 226
SLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDTRL
Sbjct: 167 SLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDTRL 226
Query: 227 NQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREEXXXXXXXXXXXXFNSTGMKRA 286
NQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREE FNSTGMKRA
Sbjct: 227 NQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREESPSPHLSPSVSPFNSTGMKRA 286
Query: 287 KTGR 290
KTGR
Sbjct: 287 KTGR 290
>Os05g0419500 KH domain containing protein
Length = 291
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/246 (77%), Positives = 203/246 (82%), Gaps = 3/246 (1%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRLPGLPVNGQPMDLE 106
QKLAPF+QVLPFC RLLNQEILRASSLPPN NFV+PER+ HGSPLRL G P+NGQPMDLE
Sbjct: 47 QKLAPFMQVLPFCNRLLNQEILRASSLPPNPNFVEPERVNHGSPLRLTGHPMNGQPMDLE 106
Query: 107 GWSGMQTENMRVLQASSMGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNFVGRLLGPRGN 166
GWSGMQTE M VLQ+ SMGWN P + G+ YPNYNFVGRLLGPRGN
Sbjct: 107 GWSGMQTE-MGVLQSPSMGWNVAPGVAGSPVVKKVVRIDVPVDKYPNYNFVGRLLGPRGN 165
Query: 167 SLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDTRL 226
SLKRVEA+TQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLN+PLHVLVEAEFP+DI+D RL
Sbjct: 166 SLKRVEATTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNDPLHVLVEAEFPSDIVDVRL 225
Query: 227 NQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREE--XXXXXXXXXXXXFNSTGMK 284
NQAV ILEDLLKP+DESMDYYKKQQLRELAILNGTLREE FNSTGMK
Sbjct: 226 NQAVAILEDLLKPVDESMDYYKKQQLRELAILNGTLREESPSPHLSPSPSVSPFNSTGMK 285
Query: 285 RAKTGR 290
RAKTGR
Sbjct: 286 RAKTGR 291
>Os07g0227400 Similar to RNA binding/signal transduction protein QkI-4
Length = 286
Score = 250 bits (638), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 132/251 (52%), Positives = 166/251 (66%), Gaps = 17/251 (6%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEH------GSPLRLPGLPVNG 100
KL PF+QVLP C+RLLNQEI+R SS+ +H F D +R + SP+ P L NG
Sbjct: 40 HKLGPFMQVLPICSRLLNQEIMRVSSMVNDHGFNDFDRRRYRSPSPMSSPIMRPNLHGNG 99
Query: 101 QPMDLEGWSGMQTENM----RVLQASSMGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNF 156
W+G+ E + +SM W G P G+ YPN+NF
Sbjct: 100 ----FGPWNGIHQERLGFPPPPPPGTSMDWQGAPPSHGSYIVKKIVRMEVPVDAYPNFNF 155
Query: 157 VGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAE 216
VGR+LGPRGNSLKRVEAST CRV+IRG+GS+KD+ KE+KL+ KPGYEHLN+PLH+L+EAE
Sbjct: 156 VGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDADKEEKLKGKPGYEHLNDPLHILIEAE 215
Query: 217 FPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREEXXXXXXXXXXX 276
PA+IIDTRL QA I+++LLKP+DES DYYK+QQLRELA+LN TLRE+
Sbjct: 216 LPANIIDTRLRQAQEIMDELLKPVDESQDYYKRQQLRELAMLNSTLRED---SPHPGSVS 272
Query: 277 XFNSTGMKRAK 287
F++ GMKRAK
Sbjct: 273 PFSNGGMKRAK 283
>Os03g0815700 KH domain containing protein
Length = 281
Score = 250 bits (638), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 131/246 (53%), Positives = 163/246 (66%), Gaps = 5/246 (2%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNF--VDPERIEHGSPLRLPGLPVNGQPMD 104
QKL PF+QVLP C++LL+QEI+R SS+ NH F D R SP+ P N
Sbjct: 39 QKLGPFMQVLPICSKLLSQEIMRVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNG 98
Query: 105 LEGWSGMQTENMRVLQASSMGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNFVGRLLGPR 164
W+G+ E + Q +SM W G P + YPN+NFVGR+LGPR
Sbjct: 99 FSPWNGLHQERLGFPQGTSMDWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPR 158
Query: 165 GNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDT 224
GNSLKRVEAST CRV+IRG+GS+KD KEDKLR KPGYEHL++PLH+L+EAEFPA IID
Sbjct: 159 GNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDA 218
Query: 225 RLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREEXXXXXXXXXXXXFNSTGMK 284
RL A ++E+LLKP+DES D+YK+QQLRELA+LN TLRE+ F++ GMK
Sbjct: 219 RLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTLRED---SPHPGSVSPFSNGGMK 275
Query: 285 RAKTGR 290
RAKTG+
Sbjct: 276 RAKTGQ 281
>Os05g0481500 KH domain containing protein
Length = 282
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/247 (49%), Positives = 157/247 (63%), Gaps = 15/247 (6%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRL------PGLPVNG 100
QKL PF+QVLP C+RLLNQEI+R S + D ER + SP ++ P N
Sbjct: 44 QKLGPFMQVLPICSRLLNQEIMRVSGMFRQPGVGDFERSQPASPNQMHPSHIVPNFCGNA 103
Query: 101 QPMDLEGWSGMQTENMRVLQASSMGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNFVGRL 160
W+GM+ E RV + GW G P + YPN+NF+GRL
Sbjct: 104 ----FGPWNGMRPE--RVSFSQGPGWQGAPQSPSSYIVKKILRLEIPTDAYPNFNFIGRL 157
Query: 161 LGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPAD 220
LGPRGNSLKR+EAST CRV+IRG+GS+KD KE++L+ + GYEHL++PLH+L+EAE PA+
Sbjct: 158 LGPRGNSLKRIEASTGCRVFIRGKGSIKDPNKEEQLKGRAGYEHLDDPLHILIEAELPAN 217
Query: 221 IIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREEXXXXXXXXXXXXFNS 280
+ID RL +A ILE+LLKP+DES DYYK+QQLRELA+LN LREE F++
Sbjct: 218 VIDARLAKAQEILEELLKPVDESQDYYKRQQLRELALLNSPLREE---SPHPGSASPFSN 274
Query: 281 TGMKRAK 287
GMKR K
Sbjct: 275 GGMKRMK 281
>Os01g0818300 KH domain containing protein
Length = 283
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 149/221 (67%), Gaps = 4/221 (1%)
Query: 47 QKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRLPGLPV--NGQPMD 104
QK+ PFVQVLP C RLLNQEI+R S++ + + +R+ SP ++ LP N
Sbjct: 44 QKIGPFVQVLPICGRLLNQEIMRMSAIVSHLGVREHDRLPIASPNQMHPLPQVPNFCGNG 103
Query: 105 LEGWSGMQTENMRVLQASSMGWNGPPAITGTXXXXXXXXXXXXXXXYPNYNFVGRLLGPR 164
W+G E +MGW G A + YP++NF+GRLLGPR
Sbjct: 104 FNPWTGTLPEK-NGFPRGTMGWEGA-AHDPSYIVKKIVRLEVPTDAYPHFNFIGRLLGPR 161
Query: 165 GNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDT 224
GNSLKRVEAST CRV+IRG+GS+KD +KE++L+ +PGYEHL++P H+L+EAE PAD+IDT
Sbjct: 162 GNSLKRVEASTGCRVFIRGKGSIKDPIKEEQLKGRPGYEHLSDPTHILIEAELPADVIDT 221
Query: 225 RLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREE 265
RL QA ILEDLLKP++ES D+ K+QQLRELA+LN T RE+
Sbjct: 222 RLAQAQEILEDLLKPVEESQDFLKRQQLRELAVLNSTYRED 262
>Os04g0385700 KH domain containing protein
Length = 231
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 75/115 (65%), Gaps = 6/115 (5%)
Query: 151 YPNYNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLH 210
+P YNF+G ++GPRGN+ KR+E T ++ IRG+GSVK+ K KP NE LH
Sbjct: 106 FPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDPSE-NEDLH 164
Query: 211 VLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREE 265
VLVEAE L+ A ++E LL P+DE ++ +K+QQLRELA LN T+R++
Sbjct: 165 VLVEAE-----TQEALDAAAGMVEKLLTPVDEVLNEHKRQQLRELAALNATIRDD 214
>Os02g0722700 Conserved hypothetical protein
Length = 52
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 41/48 (85%)
Query: 193 EDKLRDKPGYEHLNEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPI 240
ED +R KPGYEHLNEPLH+LVEAE P +IIDTRL QA ILEDLLKP+
Sbjct: 1 EDMMRGKPGYEHLNEPLHILVEAELPVEIIDTRLIQARDILEDLLKPV 48
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,575,967
Number of extensions: 290457
Number of successful extensions: 631
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 8
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)