Os04g0385700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KH domain containing protein.
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Os04g0385700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.14 | 0.346 | 11.2 | 2.11 | 0.36 | -0.558 | -0.119 | 3.78 | 0.452 | 22.2 | 9.333 | 797 | -- | -- |
| 64.66 | 0.375 | 11.2 | 1.55 | 0.262 | -0.425 | 0.55 | -- | 0.327 | 21.8 | 6.092 | 8822 | -- | -- |
| 54.19 | 0.343 | 11.2 | 2.09 | 0.359 | -0.556 | -- | 3.68 | 0.447 | 22.2 | 9.55 | 797 | -- | -- |
| 65.71 | 0.378 | 11.2 | 1.51 | 0.265 | -0.435 | -- | -- | 0.317 | 22.6 | 6.023 | 8903 | -- | -- |
| 60.74 | 0.363 | 11.2 | 2.07 | -- | -0.302 | -- | 3.63 | 0.418 | -- | 0.566 | 948 | -- | -- |
| 67.58 | 0.385 | 11.3 | 1.3 | 0.262 | -- | 0.537 | -- | 0.188 | 22.3 | -- | -- | -- | -- |
| 68.72 | 0.388 | 11.3 | 1.28 | 0.258 | -- | -- | -- | 0.186 | 22.5 | -- | -- | -- | -- |
| 69.31 | 0.389 | 11.2 | 1.37 | -- | -0.491 | -- | -- | 0.253 | -- | 0.566 | 948 | -- | -- |
| 84.15 | 0.427 | 11.4 | -- | 0.246 | 0.845 | -- | -- | -0.208 | 22.4 | 4.758 | 47520 | -- | -- |
| 72.81 | 0.399 | 11.3 | 1.28 | -- | -- | -- | -- | 0.187 | -- | -- | -- | -- | -- |
| 111.69 | 0.494 | 11.3 | -- | 0.268 | -- | -- | -- | 0.0439 | 22.9 | -- | -- | -- | -- |
| 86.03 | 0.432 | 11.4 | -- | -- | 0.819 | -- | -- | -0.246 | -- | 19.1 | 47520 | -- | -- |
| 116.13 | 0.503 | 11.3 | -- | -- | -- | -- | -- | 0.0451 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 2 | 53.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 6 | 53.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 20 |
| 14 | 53.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 28 | 53.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 53 | 53.95 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 73 | 53.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 90 | 54.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 115 | 54.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 116 | 54.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 137 | 54.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 207 | 54.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 213 | 54.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 214 | 54.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 215 | 54.30 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 233 | 54.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 250 | 54.38 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 257 | 54.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 265 | 54.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 288 | 54.44 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 318 | 54.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 378 | 54.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 379 | 54.59 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 386 | 54.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 419 | 54.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 420 | 54.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 456 | 54.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 464 | 54.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 514 | 54.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 537 | 54.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 601 | 54.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 650 | 54.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 657 | 54.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 710 | 55.02 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 869 | 55.22 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 899 | 55.26 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |