BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0385700 Os04g0385700|AK121107
(231 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G51300.1 | chr5:20849881-20852295 REVERSE LENGTH=805 407 e-114
AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299 105 2e-23
AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284 100 9e-22
AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309 98 4e-21
AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287 97 5e-21
AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316 96 1e-20
AT3G32940.1 | chr3:13491089-13493630 REVERSE LENGTH=608 84 8e-17
>AT5G51300.1 | chr5:20849881-20852295 REVERSE LENGTH=805
Length = 804
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/233 (84%), Positives = 212/233 (90%), Gaps = 2/233 (0%)
Query: 1 MKDFAA--DLDPEVHNLNARLLEISRMLQSGLPLDDRPEGARSPSPEPVYDNLGIRINTR 58
MKDF + DPE+ LN+RLLEISRMLQSG+PLDDRPEG RSPSPEPVYDN+GIRINTR
Sbjct: 145 MKDFTGGIEFDPEIQALNSRLLEISRMLQSGMPLDDRPEGQRSPSPEPVYDNMGIRINTR 204
Query: 59 EYRARERLNRERQEIISQLIRRNPAFKPPADYRPPKLQKKLYIPMKEFPGYNFIGLIIGP 118
EYRARERLNRERQEII+Q+I++NPAFKPPADYRPPKL KKL+IPMKEFPGYNFIGLIIGP
Sbjct: 205 EYRARERLNRERQEIIAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGP 264
Query: 119 RGNTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDPSENEDLHVLVEAETQEALDAA 178
RGNTQKRME+ETGAKIVIRGKGSVKEG+ QK+D+K DPSENEDLHVLVEAETQEAL+AA
Sbjct: 265 RGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDPSENEDLHVLVEAETQEALEAA 324
Query: 179 AGMVEKLLTPVDEVLNEHKRQQLRELAALNATIRDDECCRNCGEPGHRHVRLP 231
AGMVEKLL PVDEVLNEHKRQQLRELA LN TIRD+E CR CGEPGHR P
Sbjct: 325 AGMVEKLLQPVDEVLNEHKRQQLRELATLNGTIRDEEFCRLCGEPGHRQYACP 377
>AT1G09660.1 | chr1:3128032-3130791 REVERSE LENGTH=299
Length = 298
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 87/131 (66%), Gaps = 8/131 (6%)
Query: 92 PPKLQK--KLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQ 149
PP ++K +L +P+ ++P YNF+G I+GPRGN+ KR+E T ++ IRG+GSVK+ +
Sbjct: 142 PPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEE 201
Query: 150 KRDMKPDPSE-NEDLHVLVEAETQE-----ALDAAAGMVEKLLTPVDEVLNEHKRQQLRE 203
K KP E LHVL+EAE E L+ A +E LL P+DE ++ +KR+QL+E
Sbjct: 202 KLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKE 261
Query: 204 LAALNATIRDD 214
LAALN T+R++
Sbjct: 262 LAALNGTLREE 272
>AT3G08620.1 | chr3:2617925-2620314 FORWARD LENGTH=284
Length = 283
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 86/135 (63%), Gaps = 7/135 (5%)
Query: 87 PADYRPPKLQKKLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGK 146
P+ Y P K +L +P+ +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ +
Sbjct: 128 PSSY-PVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPE 186
Query: 147 LLQKRDMKPDPSE-NEDLHVLVEAE-----TQEALDAAAGMVEKLLTPVDEVLNEHKRQQ 200
+K KP NE LH+L+EA+ L A ++E+L+ PVDE + KRQQ
Sbjct: 187 KEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQ 246
Query: 201 LRELAALNATIRDDE 215
LRELA LN+ +R++
Sbjct: 247 LRELALLNSNLRENS 261
>AT4G26480.1 | chr4:13372885-13375793 REVERSE LENGTH=309
Length = 308
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 85/122 (69%), Gaps = 10/122 (8%)
Query: 101 IPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDPSE- 159
IP+ ++P YNF+G ++GPRGN+ KR+E T +++IRG+GS+K+ +++ M+ P
Sbjct: 166 IPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDP--IKEDMMRGKPGYE 223
Query: 160 --NEDLHVLVEAETQ-EALDA----AAGMVEKLLTPVDEVLNEHKRQQLRELAALNATIR 212
NE LH+LVEAE E +DA A +++ LLTPV+E + +K+QQLRELA LN ++R
Sbjct: 224 HLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGSLR 283
Query: 213 DD 214
++
Sbjct: 284 EE 285
>AT2G38610.1 | chr2:16147552-16149638 REVERSE LENGTH=287
Length = 286
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 110/203 (54%), Gaps = 11/203 (5%)
Query: 15 LNARLLEISRMLQS-GLPLDDRPEGARSPSPEPVYDNLGIRINTREYRARERLNRERQEI 73
LN + +S M+ + G DR RSPSP NL ++ L++ER
Sbjct: 57 LNQEMFRVSGMMSNQGFGDFDRLR-HRSPSPM-ASSNLMSNVSNTGLGGWNGLSQERLSG 114
Query: 74 ISQL-IRRNPAFKPPADYRPPKLQKKLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGA 132
+ + A P+ Y ++ + L IP+ +P +NF+G ++GPRGN+ KR+E TG
Sbjct: 115 TPGMTMDWQGAPGSPSSYTVKRILR-LEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGC 173
Query: 133 KIVIRGKGSVKEGKLLQKRDMKPDPSE-NEDLHVLVEAETQEA-----LDAAAGMVEKLL 186
++ IRGKGS+K+ + K +P NE LH+L+EA+ + L A ++E+LL
Sbjct: 174 RVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELL 233
Query: 187 TPVDEVLNEHKRQQLRELAALNA 209
PVDE + KRQQLRELA LN+
Sbjct: 234 KPVDESQDFIKRQQLRELALLNS 256
>AT5G56140.1 | chr5:22725462-22727932 FORWARD LENGTH=316
Length = 315
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 84/122 (68%), Gaps = 10/122 (8%)
Query: 101 IPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDPSE- 159
IP+ +P +NF+G ++GPRGN+ KR+E T +++IRG+GS+K+ +++ M+ P
Sbjct: 172 IPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDP--IKEEMMRGKPGYE 229
Query: 160 --NEDLHVLVEAETQ-EALDA----AAGMVEKLLTPVDEVLNEHKRQQLRELAALNATIR 212
NE LH+LVEAE E +DA A +++ LLTP++E + +K+QQLRELA LN T+R
Sbjct: 230 HLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLR 289
Query: 213 DD 214
++
Sbjct: 290 EE 291
>AT3G32940.1 | chr3:13491089-13493630 REVERSE LENGTH=608
Length = 607
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 75/128 (58%)
Query: 63 RERLNRERQEIISQLIRRNPAFKPPADYRPPKLQKKLYIPMKEFPGYNFIGLIIGPRGNT 122
R L E++E I +++ NP +K P DY+P + +L I +KE ++F+ LI G +G+T
Sbjct: 101 RTDLEFEKREAIGEILELNPRYKAPPDYKPLLKEARLPIDVKEHSDFSFLSLIFGSQGDT 160
Query: 123 QKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDPSENEDLHVLVEAETQEALDAAAGMV 182
QKR+EKETGAK+ I G + E L D ++L+ + ++T E +DAA +V
Sbjct: 161 QKRLEKETGAKVQIFGTKTGGEKVELSPSDENEIQKSWQELYFQISSDTYEKVDAAIAVV 220
Query: 183 EKLLTPVD 190
E L++ V
Sbjct: 221 ELLMSSVS 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,341,820
Number of extensions: 238741
Number of successful extensions: 831
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 7
Length of query: 231
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 136
Effective length of database: 8,502,049
Effective search space: 1156278664
Effective search space used: 1156278664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)