BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0385700 Os04g0385700|AK121107
(231 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0385700 KH domain containing protein 469 e-133
Os01g0886300 KH domain containing protein 106 1e-23
Os07g0227400 Similar to RNA binding/signal transduction pro... 105 2e-23
Os03g0815700 KH domain containing protein 105 3e-23
Os05g0419500 KH domain containing protein 102 3e-22
Os05g0481500 KH domain containing protein 97 1e-20
Os01g0818300 KH domain containing protein 94 7e-20
>Os04g0385700 KH domain containing protein
Length = 231
Score = 469 bits (1207), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MKDFAADLDPEVHNLNARLLEISRMLQSGLPLDDRPEGARSPSPEPVYDNLGIRINTREY 60
MKDFAADLDPEVHNLNARLLEISRMLQSGLPLDDRPEGARSPSPEPVYDNLGIRINTREY
Sbjct: 1 MKDFAADLDPEVHNLNARLLEISRMLQSGLPLDDRPEGARSPSPEPVYDNLGIRINTREY 60
Query: 61 RARERLNRERQEIISQLIRRNPAFKPPADYRPPKLQKKLYIPMKEFPGYNFIGLIIGPRG 120
RARERLNRERQEIISQLIRRNPAFKPPADYRPPKLQKKLYIPMKEFPGYNFIGLIIGPRG
Sbjct: 61 RARERLNRERQEIISQLIRRNPAFKPPADYRPPKLQKKLYIPMKEFPGYNFIGLIIGPRG 120
Query: 121 NTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDPSENEDLHVLVEAETQEALDAAAG 180
NTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDPSENEDLHVLVEAETQEALDAAAG
Sbjct: 121 NTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDPSENEDLHVLVEAETQEALDAAAG 180
Query: 181 MVEKLLTPVDEVLNEHKRQQLRELAALNATIRDDECCRNCGEPGHRHVRLP 231
MVEKLLTPVDEVLNEHKRQQLRELAALNATIRDDECCRNCGEPGHRHVRLP
Sbjct: 181 MVEKLLTPVDEVLNEHKRQQLRELAALNATIRDDECCRNCGEPGHRHVRLP 231
>Os01g0886300 KH domain containing protein
Length = 290
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 88/138 (63%), Gaps = 8/138 (5%)
Query: 86 PPADYRPPKLQK--KLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVK 143
PPA P ++K +L +P+ ++P YNF+G ++GPRGN+ KR+E T ++ IRG+GSVK
Sbjct: 129 PPAITGTPVVKKVVRLDVPVDKYPNYNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVK 188
Query: 144 EGKLLQKRDMKPDPSE-NEDLHVLVEAE-----TQEALDAAAGMVEKLLTPVDEVLNEHK 197
+ K KP NE LHVLVEAE L+ A ++E LL P+DE ++ +K
Sbjct: 189 DSVKEDKLRDKPGYEHLNEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYK 248
Query: 198 RQQLRELAALNATIRDDE 215
+QQLRELA LN T+R++
Sbjct: 249 KQQLRELAILNGTLREES 266
>Os07g0227400 Similar to RNA binding/signal transduction protein QkI-4
Length = 286
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 82/124 (66%), Gaps = 6/124 (4%)
Query: 98 KLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDP 157
++ +P+ +P +NF+G I+GPRGN+ KR+E TG ++ IRGKGS+K+ +K KP
Sbjct: 142 RMEVPVDAYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDADKEEKLKGKPGY 201
Query: 158 SE-NEDLHVLVEAE-----TQEALDAAAGMVEKLLTPVDEVLNEHKRQQLRELAALNATI 211
N+ LH+L+EAE L A ++++LL PVDE + +KRQQLRELA LN+T+
Sbjct: 202 EHLNDPLHILIEAELPANIIDTRLRQAQEIMDELLKPVDESQDYYKRQQLRELAMLNSTL 261
Query: 212 RDDE 215
R+D
Sbjct: 262 REDS 265
>Os03g0815700 KH domain containing protein
Length = 281
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 83/124 (66%), Gaps = 6/124 (4%)
Query: 98 KLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDP 157
+L +P+ +P +NF+G I+GPRGN+ KR+E TG ++ IRGKGS+K+ K KP
Sbjct: 137 RLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGY 196
Query: 158 SENED-LHVLVEAETQEA-LDA----AAGMVEKLLTPVDEVLNEHKRQQLRELAALNATI 211
D LH+L+EAE + +DA A ++E+LL PVDE + +KRQQLRELA LN+T+
Sbjct: 197 EHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTL 256
Query: 212 RDDE 215
R+D
Sbjct: 257 REDS 260
>Os05g0419500 KH domain containing protein
Length = 291
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 79/120 (65%), Gaps = 6/120 (5%)
Query: 101 IPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDPSE- 159
+P+ ++P YNF+G ++GPRGN+ KR+E T ++ IRG+GSVK+ K KP
Sbjct: 145 VPVDKYPNYNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHL 204
Query: 160 NEDLHVLVEAE-----TQEALDAAAGMVEKLLTPVDEVLNEHKRQQLRELAALNATIRDD 214
N+ LHVLVEAE L+ A ++E LL PVDE ++ +K+QQLRELA LN T+R++
Sbjct: 205 NDPLHVLVEAEFPSDIVDVRLNQAVAILEDLLKPVDESMDYYKKQQLRELAILNGTLREE 264
>Os05g0481500 KH domain containing protein
Length = 282
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 81/124 (65%), Gaps = 6/124 (4%)
Query: 98 KLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKE-GKLLQKRDMKPD 156
+L IP +P +NFIG ++GPRGN+ KR+E TG ++ IRGKGS+K+ K Q +
Sbjct: 140 RLEIPTDAYPNFNFIGRLLGPRGNSLKRIEASTGCRVFIRGKGSIKDPNKEEQLKGRAGY 199
Query: 157 PSENEDLHVLVEAET-QEALDA----AAGMVEKLLTPVDEVLNEHKRQQLRELAALNATI 211
++ LH+L+EAE +DA A ++E+LL PVDE + +KRQQLRELA LN+ +
Sbjct: 200 EHLDDPLHILIEAELPANVIDARLAKAQEILEELLKPVDESQDYYKRQQLRELALLNSPL 259
Query: 212 RDDE 215
R++
Sbjct: 260 REES 263
>Os01g0818300 KH domain containing protein
Length = 283
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 81/130 (62%), Gaps = 10/130 (7%)
Query: 98 KLYIPMKEFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGKLLQKRDMKPDP 157
+L +P +P +NFIG ++GPRGN+ KR+E TG ++ IRGKGS+K+ +++ +K P
Sbjct: 140 RLEVPTDAYPHFNFIGRLLGPRGNSLKRVEASTGCRVFIRGKGSIKDP--IKEEQLKGRP 197
Query: 158 SE---NEDLHVLVEAE-----TQEALDAAAGMVEKLLTPVDEVLNEHKRQQLRELAALNA 209
++ H+L+EAE L A ++E LL PV+E + KRQQLRELA LN+
Sbjct: 198 GYEHLSDPTHILIEAELPADVIDTRLAQAQEILEDLLKPVEESQDFLKRQQLRELAVLNS 257
Query: 210 TIRDDECCRN 219
T R+D +N
Sbjct: 258 TYREDSPHQN 267
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,576,124
Number of extensions: 382683
Number of successful extensions: 1169
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1160
Number of HSP's successfully gapped: 7
Length of query: 231
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 133
Effective length of database: 11,918,829
Effective search space: 1585204257
Effective search space used: 1585204257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)