Os05g0419500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : KH domain containing protein.
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Os05g0419500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : KH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.03 | 0.352 | 12.8 | -0.211 | 2.03 | 0.631 | -0.0411 | -0.641 | -0.063 | 6.83 | 77.66 | 744 | -- | -- |
| 56.51 | 0.35 | 12.8 | -0.168 | 2.02 | 0.608 | 0.262 | -- | -0.0601 | 6.79 | 76.54 | 743 | -- | -- |
| 56.04 | 0.349 | 12.8 | -0.21 | 2.03 | 0.629 | -- | -0.619 | -0.0625 | 6.82 | 77.64 | 741 | -- | -- |
| 56.7 | 0.351 | 12.8 | -0.164 | 2.02 | 0.62 | -- | -- | -0.0605 | 6.8 | 76.86 | 743 | -- | -- |
| 204.21 | 0.669 | 12.9 | -0.054 | -- | -0.272 | -- | -0.383 | -0.0102 | -- | 73.99 | 7069 | -- | -- |
| 63.73 | 0.374 | 12.8 | -0.111 | 1.69 | -- | 0.297 | -- | -0.0428 | 6.52 | -- | -- | -- | -- |
| 63.95 | 0.374 | 12.8 | -0.106 | 1.69 | -- | -- | -- | -0.0436 | 6.53 | -- | -- | -- | -- |
| 203.58 | 0.667 | 12.9 | -0.0396 | -- | -0.296 | -- | -- | -0.00496 | -- | 74.34 | 33751 | -- | -- |
| 57.41 | 0.353 | 12.8 | -- | 2.02 | 0.603 | -- | -- | -0.0452 | 6.8 | 77 | 741 | -- | -- |
| 212.72 | 0.682 | 12.9 | -0.0644 | -- | -- | -- | -- | -0.00872 | -- | -- | -- | -- | -- |
| 64.25 | 0.375 | 12.8 | -- | 1.69 | -- | -- | -- | -0.0318 | 6.53 | -- | -- | -- | -- |
| 203.62 | 0.667 | 12.9 | -- | -- | -0.297 | -- | -- | -0.000561 | -- | 74 | 33755 | -- | -- |
| 212.83 | 0.681 | 12.9 | -- | -- | -- | -- | -- | -0.00157 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.58 | humidity | 50 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 5 | 50.82 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 7 |
| 10 | 51.32 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 7 |
| 15 | 51.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 7 |
| 23 | 51.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 6 |
| 50 | 52.32 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 15 |
| 66 | 52.49 | temperature | 30 | 90 | < th | dose independent | rect. | 13 | 14 |
| 122 | 53.06 | humidity | 80 | 270 | > th | dose independent | rect. | 11 | 15 |
| 126 | 53.09 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 6 |
| 131 | 53.10 | humidity | 50 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 168 | 53.41 | humidity | 60 | 90 | > th | dose independent | rect. | 13 | 14 |
| 255 | 53.89 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 10 |
| 278 | 54.02 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 12 |
| 280 | 54.03 | humidity | 50 | 270 | > th | dose independent | rect. | 11 | 14 |
| 282 | 54.04 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 292 | 54.09 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 2 |
| 328 | 54.17 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 10 |
| 338 | 54.21 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 4 |
| 349 | 54.25 | temperature | 25 | 270 | > th | dose dependent | sin | 15 | NA |
| 365 | 54.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 376 | 54.39 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 17 |
| 380 | 54.41 | humidity | 80 | 720 | > th | dose independent | sin | 21 | NA |
| 385 | 54.42 | humidity | 50 | 270 | > th | dose dependent | sin | 15 | NA |
| 423 | 54.54 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 18 |
| 452 | 54.60 | humidity | 50 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 500 | 54.72 | humidity | 90 | 90 | < th | dose independent | rect. | 16 | 7 |
| 512 | 54.74 | humidity | 50 | 720 | > th | dose dependent | sin | 20 | NA |
| 515 | 54.74 | humidity | 50 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 564 | 54.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 592 | 54.94 | radiation | 1 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 649 | 55.04 | temperature | 10 | 90 | > th | dose dependent | rect. | 23 | 17 |
| 669 | 55.09 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 11 |
| 745 | 55.22 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 4 |
| 747 | 55.22 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 760 | 55.24 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 2 |
| 813 | 55.31 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 826 | 55.34 | humidity | 80 | 30 | > th | dose dependent | sin | 16 | NA |
| 828 | 55.34 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 857 | 55.40 | wind | 9 | 270 | < th | dose independent | rect. | 11 | 14 |
| 866 | 55.41 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 21 |
| 868 | 55.41 | humidity | 90 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 870 | 55.41 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 880 | 55.42 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 899 | 55.45 | humidity | 80 | 10 | > th | dose independent | rect. | 13 | 15 |
| 920 | 55.47 | humidity | 90 | 270 | < th | dose dependent | rect. | 16 | 5 |
| 955 | 55.52 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 4 |
| 970 | 55.54 | humidity | 80 | 720 | < th | dose independent | sin | 1 | NA |
| 988 | 55.56 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 4 |